Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E03
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    32   0.47 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.6  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 24/100 (24%), Positives = 28/100 (28%)
 Frame = +2

Query: 314 PXEGXXGFXPXXKRPKPXXXPXXXGPPPXNPPXXSGXPXXXPGXXGXXXXXXXXXXXXXX 493
           P +G  G  P  +   P        PPP +    +  P    G  G              
Sbjct: 343 PPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQG 402

Query: 494 XXXXXXXXXXXGGXPXXXXFXGPPXXGGPLXXGPPPXXXP 613
                       G P      GPP  GGP   GPPP   P
Sbjct: 403 PGGPGGYGPPPPGGPGAPGSYGPPQ-GGPGGFGPPPPGGP 441


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/86 (26%), Positives = 23/86 (26%)
 Frame = +2

Query: 560 PPXXGGPLXXGPPPXXXPQXXXXXXXXXXXXXXXXXK*XGVXPPPXXXIXXKXXFSPXXX 739
           PP  GGP    PPP   P                        PPP           P   
Sbjct: 707 PPITGGP---PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763

Query: 740 XXGGXPXSXXPPXXXXXXGGXXXPPP 817
             GG P    PP      GG   PPP
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPPPPP 789


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/86 (26%), Positives = 23/86 (26%)
 Frame = +2

Query: 560 PPXXGGPLXXGPPPXXXPQXXXXXXXXXXXXXXXXXK*XGVXPPPXXXIXXKXXFSPXXX 739
           PP  GGP    PPP   P                        PPP           P   
Sbjct: 707 PPITGGP---PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763

Query: 740 XXGGXPXSXXPPXXXXXXGGXXXPPP 817
             GG P    PP      GG   PPP
Sbjct: 764 PPGGCPPPPPPPPPGGFKGGPPPPPP 789


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/86 (26%), Positives = 23/86 (26%)
 Frame = +2

Query: 560 PPXXGGPLXXGPPPXXXPQXXXXXXXXXXXXXXXXXK*XGVXPPPXXXIXXKXXFSPXXX 739
           PP  GGP    PPP   P                        PPP           P   
Sbjct: 290 PPITGGP---PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 346

Query: 740 XXGGXPXSXXPPXXXXXXGGXXXPPP 817
             GG P    PP      GG   PPP
Sbjct: 347 PPGGCPPPPPPPPPGGFKGGPPPPPP 372


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/76 (26%), Positives = 26/76 (34%)
 Frame = +2

Query: 215 PPAKMGXXKALFVTKXGXPXXXPXXMAXXKFSXPXEGXXGFXPXXKRPKPXXXPXXXGPP 394
           PP  MG  ++ +  +   P   P   +      P     G  P   RP P        PP
Sbjct: 245 PPPLMGMAQSGY--QGQYPPVPPPPPSVTPMPPPMPPTPGMTP---RPPPPPSSGMWPPP 299

Query: 395 PXNPPXXSGXPXXXPG 442
           P  PP  +  P   PG
Sbjct: 300 PPPPPGRTPGPPGMPG 315


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 387 GPPRXTPPXXPGPPXXXP 440
           GPP   PP  PGPP   P
Sbjct: 251 GPPTRRPPGPPGPPTRRP 268



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 387 GPPRXTPPXXPGPPXXXP 440
           GPP   PP  PGPP   P
Sbjct: 262 GPPTRRPPGPPGPPTRRP 279


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/76 (26%), Positives = 26/76 (34%)
 Frame = +2

Query: 215 PPAKMGXXKALFVTKXGXPXXXPXXMAXXKFSXPXEGXXGFXPXXKRPKPXXXPXXXGPP 394
           PP  MG  ++ +  +   P   P   +      P     G  P   RP P        PP
Sbjct: 255 PPPLMGMAQSGY--QGQYPPVPPPPPSVTPMPPPMPPTPGMTP---RPPPPPSSGMWPPP 309

Query: 395 PXNPPXXSGXPXXXPG 442
           P  PP  +  P   PG
Sbjct: 310 PPPPPGRTPGPPGMPG 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,147,504
Number of Sequences: 27780
Number of extensions: 176448
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)