Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E03
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    25   3.4  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   7.1  
At3g11030.1 68416.m01331 expressed protein contains Pfam domain ...    28   9.4  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 25.4 bits (53), Expect(2) = 3.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 374 PXXXGPPPXNPPXXSGXPXXXPG 442
           P   G PP  PP   G P   PG
Sbjct: 673 PLPGGGPPPPPPPPGGGPPPPPG 695



 Score = 22.2 bits (45), Expect(2) = 3.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 560 PPXXGGPLXXGPPP 601
           PP  GGP    PPP
Sbjct: 692 PPPGGGPPPPPPPP 705


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 342 PKXNGQNPXXTLXXLGPPRXTPPXXPGPPXXXP 440
           PK N  NP        PP+ TP   P P    P
Sbjct: 49  PKSNNPNPKSPSPSPSPPKKTPKLNPNPSSNLP 81


>At3g11030.1 68416.m01331 expressed protein contains Pfam domain
           PF03005: Arabidopsis proteins of unknown function
          Length = 451

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 356 PKPXXXPXXXGPPPXNPPXXSGXPXXXP 439
           P P   P    PPP +PP  S  P   P
Sbjct: 66  PPPPTSPPPPSPPPPSPPPPSPPPPSPP 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,645,548
Number of Sequences: 28952
Number of extensions: 152266
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)