Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E02
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    46   1e-05
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   8.5  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   8.5  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 27/73 (36%), Positives = 33/73 (45%)
 Frame = +2

Query: 488 DDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGVE*AD 667
           DD           +  + GI+EVNM KEDG VI+F  P   +SL   T AI G   E   
Sbjct: 37  DDKKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTL 96

Query: 668 HRDAPGIXASSDP 706
               PGI  +  P
Sbjct: 97  SEILPGILNNLGP 109



 Score = 32.3 bits (70), Expect = 0.098
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +1

Query: 385 MNSEKLKKLQSQVRIGGKGTP 447
           M+  KL KLQ+  RIGGKGTP
Sbjct: 1   MDPSKLAKLQAGARIGGKGTP 21


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 672 LWSAYSTPCPVIANVFAASDACAFGLLKCITVPSSLIIFTSSMPGIVFTDNFLSDDC-SF 496
           L+SA S    +   VF  S    F LL    VP++L +F    P  + T +F+  +  + 
Sbjct: 19  LFSAISFGISIYIKVFGRSSIVTFFLLCFHLVPNALFLF----PWTIITTSFVDANVFTL 74

Query: 495 LSSV 484
           LSS+
Sbjct: 75  LSSI 78


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 227 RDLK*KTKRLNLPVNFLVFQF 165
           RDL  KTKRL  P N L+ QF
Sbjct: 126 RDLLIKTKRLPKPFNNLLIQF 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,450
Number of Sequences: 5004
Number of extensions: 57742
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)