Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E02
         (911 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264...    56   3e-08
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53...    56   5e-08
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095...    37   0.019
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    32   0.73 

>10_08_0411 -
           17725661-17725842,17726066-17726104,17726379-17726435,
           17726524-17726672,17727195-17727262,17727796-17727798
          Length = 165

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 28/53 (52%), Positives = 34/53 (64%)
 Frame = +2

Query: 488 DDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 646
           DD           VNTIPGIEEVN+ K+D  VI F NPK QAS+ ANT+ ++G
Sbjct: 36  DDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSG 87



 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 385 MNSEKLKKLQSQVRIGGKGT 444
           MN +KLKK+   VR GGKG+
Sbjct: 2   MNVDKLKKMAGAVRTGGKGS 21


>03_01_0067 -
           538929-539143,539306-539344,539579-539635,539727-539875,
           540298-540365,542009-542093,542185-542246,542612-542700,
           543034-543088,544127-544252,544477-544576,544697-545499
          Length = 615

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 27/53 (50%), Positives = 33/53 (62%)
 Frame = +2

Query: 488 DDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 646
           DD           VN IPGIEEVN+ K+D  VI F NPK QAS+ ANT+ ++G
Sbjct: 475 DDKRLQSTLKRVGVNNIPGIEEVNIFKDD-VVIQFQNPKVQASIGANTWVVSG 526



 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 385 MNSEKLKKLQSQVRIGGKGT 444
           MN +KLKK+   VR GGKG+
Sbjct: 441 MNVDKLKKMAGAVRTGGKGS 460


>03_06_0698 +
           35608666-35608709,35608810-35608958,35609493-35609531,
           35610024-35610163,35611130-35611244,35611281-35611399,
           35611413-35611979
          Length = 390

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 20/39 (51%), Positives = 22/39 (56%)
 Frame = +2

Query: 488 DDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPK 604
           DD           VNTIP IEEVN+ K+D  VI F NPK
Sbjct: 27  DDKRLQSTLKRVGVNTIPAIEEVNIFKDD-LVIQFVNPK 64


>08_02_0550 +
           18509365-18509589,18509668-18510644,18510828-18511802,
           18511885-18512142,18512216-18512326,18512418-18512496,
           18512595-18512687,18512773-18512958
          Length = 967

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +1

Query: 340 CPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPXTQEEGCSRYCGHR*QKTAVIAQK 519
           CP  +      +  R  +   K++ +  RIG KG P + E+ CS+Y     Q  A++   
Sbjct: 104 CPTASSKPKKRRGERGKNVLSKEVHALTRIGEKGEPLSPEDVCSKYSN---QCGAIVRDN 160

Query: 520 VVSEHNSWHR 549
           V      W +
Sbjct: 161 VEITFKDWKK 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,697,760
Number of Sequences: 37544
Number of extensions: 445725
Number of successful extensions: 894
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)