Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E02
         (911 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)                   60   2e-09
SB_7319| Best HMM Match : SRCR (HMM E-Value=0)                         31   1.3  
SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)                    29   5.2  
SB_2939| Best HMM Match : Ku (HMM E-Value=2.8e-07)                     28   9.1  

>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
          Length = 98

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = +2

Query: 527 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAA 625
           VN IPGIEEVNMIKEDGTVIHFNNPKA+    A
Sbjct: 54  VNPIPGIEEVNMIKEDGTVIHFNNPKAEMGSGA 86


>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 957

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
 Frame = -3

Query: 747 NTSTQSXSVGXXPVGSE--LAXIPGASLW-SAYSTPCPVIANVFAA-SDACAFGLLKCIT 580
           N ++ S  V   P+ SE  L  + G  +W S    PC ++ N  +A S +C         
Sbjct: 509 NNNSTSLFVAWDPLSSEQILGRLLGYYIWYSPAPGPCSLLNNCSSANSTSCT----NTTA 564

Query: 579 VPSSLIIFTSSMPGIVFTDNFLSDDCSFLSSVAAVT*TTFFLRXRCALTADA 424
            PSS     ++      T    + DCS  ++  A   TT      C+L+ +A
Sbjct: 565 APSSNCSLATNATASANTTAAQNSDCSLSTNATASANTTAAPNSNCSLSTNA 616


>SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)
          Length = 335

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 365 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 267
           NC+    GH   T++ +Y   +YE SM + R H
Sbjct: 139 NCLWTLFGHTLRTVYRHYSDTRYELSMDVIRTH 171



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 365 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMHVF*T 255
           NC+    GH   T++  Y   +YE SM + R H   T
Sbjct: 244 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTHTLRT 280


>SB_2939| Best HMM Match : Ku (HMM E-Value=2.8e-07)
          Length = 512

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 433 GKGTPXTQEEGCSRYCGHR*QKTAVIAQKVVSEH-NSWHRRGKYDQRGRYCDTL 591
           G+GT   + +G SR  GHR QKT   AQ+V  E   SW +     Q     D++
Sbjct: 20  GEGTSDGRRDGNSRQDGHRKQKT---AQQVREEKLASWKKLSAIAQASPNSDSM 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,124,165
Number of Sequences: 59808
Number of extensions: 480555
Number of successful extensions: 846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)