Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E02
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    73   4e-13
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   6.1  
Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 33/53 (62%), Positives = 37/53 (69%)
 Frame = +2

Query: 488 DDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 646
           DD           V  IPGIEEVNMIK+DGTVIHFNNPK Q S+ ANTF++TG
Sbjct: 42  DDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTG 94



 Score = 33.1 bits (72), Expect = 0.28
 Identities = 16/32 (50%), Positives = 25/32 (78%), Gaps = 3/32 (9%)
 Frame = +1

Query: 376 NSRMNSEKLKKLQSQ---VRIGGKGTPXTQEE 462
           +S+  +E++KKLQ+Q   VRIGGKGTP  +++
Sbjct: 2   DSKAIAERIKKLQAQQEHVRIGGKGTPRRKKK 33


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 502 AVIAQKVVSEHNSWHRRGKYDQRGR 576
           ++I+  V + H++WH  G  D RGR
Sbjct: 34  SIISGDVNAHHSAWHSEGSEDTRGR 58


>Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical
           protein C04F12.10 protein.
          Length = 442

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 15  TPPVXDGXTXFFLILSQESQRPAVGLVSYSRSSE 116
           TPPV      F  +L+  +Q  ++G+V +SRS+E
Sbjct: 347 TPPVIGMMLIFQFVLALYNQLASIGMVIHSRSAE 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,410,786
Number of Sequences: 27780
Number of extensions: 359883
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)