Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E02
         (911 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73230.1 68414.m08475 nascent polypeptide-associated complex ...    54   1e-07
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ...    54   1e-07
At2g38440.1 68415.m04721 expressed protein                             29   4.3  

>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain
          Length = 165

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/53 (50%), Positives = 34/53 (64%)
 Frame = +2

Query: 488 DDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 646
           DD           VN+IP IEEVN+ K+D  VI F NPK QAS+AANT+ ++G
Sbjct: 35  DDKRLQSTLKRVGVNSIPAIEEVNIFKDD-VVIQFINPKVQASIAANTWVVSG 86



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 385 MNSEKLKKLQSQVRIGGKGT 444
           MN EKL K+ + VR GGKGT
Sbjct: 1   MNREKLMKMANTVRTGGKGT 20


>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
           (NAC) domain-containing protein / BTF3b-like
           transcription factor, putative similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain; identical to cDNA
           BTF3b-like factor GI:5912423
          Length = 165

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/53 (50%), Positives = 34/53 (64%)
 Frame = +2

Query: 488 DDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITG 646
           DD           VN+IP IEEVN+ K+D  VI F NPK QAS+AANT+ ++G
Sbjct: 35  DDKRLQSTLKRIGVNSIPAIEEVNIFKDD-VVIQFINPKVQASIAANTWVVSG 86



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 385 MNSEKLKKLQSQVRIGGKGT 444
           MN EKL K+ + VR GGKGT
Sbjct: 1   MNREKLMKMANTVRTGGKGT 20


>At2g38440.1 68415.m04721 expressed protein 
          Length = 1399

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/59 (20%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 560  MIKEDGTVIHFNNPKAQASLAANTFAITGHGVE-*ADHRDAPGIXASSDPTGXNPTXKD 733
            +++ DGT++  NNP+++  +  +   ++  G+    D++D   I ++S     +   +D
Sbjct: 890  VVESDGTLLEDNNPESEIKMHKSPLEVSSEGLSTEPDNKDVESIESTSPKPSLDQRNRD 948


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,370,552
Number of Sequences: 28952
Number of extensions: 328714
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)