Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_E01
         (1121 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   1.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   4.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   4.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   4.9  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 126 NHAXCSSFGXFENXFT-HSDYKNHHIXNFKXFPYNV 22
           N+   S++  + N +  +++Y N++  N+K   YN+
Sbjct: 320 NNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNI 355


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 135 KQDNHAXCSSFGXFENXFTHSDYKNHHIXNFKXFPYNV 22
           K   H   SS     N + +++YK  +  N+K   YN+
Sbjct: 75  KSKEHKIISSLSNNYN-YNNNNYKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 135 KQDNHAXCSSFGXFENXFTHSDYKNHHIXNFKXFPYNV 22
           K   H   SS     N + +++YK  +  N+K   YN+
Sbjct: 75  KSKEHKIISSLSNNYN-YNNNNYKKLYCNNYKKLYYNI 111


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 90  NXFTHSDYKNHHIXNFKXFPYNV 22
           N + + +Y N++  N+K   YN+
Sbjct: 99  NNYNNYNYNNNNYNNYKKLYYNI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,507
Number of Sequences: 438
Number of extensions: 934
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37837314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)