Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D24
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-4|CAA99892.2|  169|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical ...    28   8.0  

>Z75546-4|CAA99892.2|  169|Caenorhabditis elegans Hypothetical
           protein R05D11.5 protein.
          Length = 169

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 23/59 (38%), Positives = 32/59 (54%)
 Frame = +3

Query: 498 DPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILPIRVFWLLWTNILGPW 674
           D G DLN     GE+ KD +IL+ I Q+++L + Y +LLLL  P    +      L PW
Sbjct: 82  DAGADLNDPEAFGEYCKDAIILTVIIQIISLYSTYGFLLLLAFPGAATYKFVAGFLLPW 140


>AC025727-1|AAG23391.3|  429|Caenorhabditis elegans Hypothetical
           protein Y73E7A.3 protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/56 (19%), Positives = 30/56 (53%)
 Frame = +2

Query: 281 ILVENAATVKFYRNMSMAATSFYGIITALFYYENISNWVLFFNVLVLIIHIACYQL 448
           ++++  + + F  N+S     FY ++  +F +++  +++ F + +V II    Y +
Sbjct: 302 VVLQKTSALMF--NLSTLTADFYSLLFGIFMFKDTFHYLYFVSFIVCIIGSVIYSM 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,221,181
Number of Sequences: 27780
Number of extensions: 356693
Number of successful extensions: 714
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)