Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D24
         (907 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23940.1 68415.m02858 expressed protein contains 2 transmembr...    32   0.45 
At4g30500.1 68417.m04330 expressed protein contains Pfam PF05620...    32   0.60 
At5g65380.1 68418.m08223 ripening-responsive protein, putative s...    29   4.2  
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative          29   4.2  
At1g27200.1 68414.m03313 expressed protein contains Pfam PF01697...    29   5.6  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   7.4  
At4g28350.1 68417.m04058 lectin protein kinase family protein co...    28   7.4  
At3g22710.1 68416.m02865 F-box family protein contains F-box dom...    28   9.8  
At1g65740.1 68414.m07461 F-box family protein contains F-box dom...    28   9.8  

>At2g23940.1 68415.m02858 expressed protein contains 2 transmembrane
           domains; contains Pfam profile PF05620: Protein of
           unknown function (DUF788)
          Length = 173

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 498 DPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILP 629
           D G D+   GG+  ++ D++ ++   Q+ ++I   FW   L++P
Sbjct: 81  DGGFDMTT-GGICGYLHDVIYITCFVQLASIITGKFWYTYLVIP 123


>At4g30500.1 68417.m04330 expressed protein contains Pfam PF05620:
           Protein of unknown function (DUF788)
          Length = 173

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 498 DPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILP 629
           D G D++  G  G ++ D++ ++   QV ++I+  FW   L++P
Sbjct: 81  DGGFDMSTPGMCG-YLHDVLYITCFVQVGSIISGKFWYAYLVIP 123


>At5g65380.1 68418.m08223 ripening-responsive protein, putative
           similar to ripening regulated protein DDTFR18
           [Lycopersicon esculentum] GI:12231296; contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 486

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +3

Query: 510 DLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILPIRVFWLLWTNI 662
           +L    G G     IV   S+TQ L +I  +FW+L+++L  ++ W+  +++
Sbjct: 327 ELGAGNGKGARFATIV---SVTQSL-IIGLFFWVLIMLLHNQIAWIFSSSV 373


>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 
          Length = 953

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +2

Query: 518 HGGWN-----GRTYQGYCNTLIYNSSFSIDKQLLLAIASNFTNKSILAIVD 655
           HGGW       RT   +C  L+ N   S  ++ +L   S+FT+K+  + V+
Sbjct: 154 HGGWFDPDNLSRTLSSFCPELLQNDDSSDPREDILDDGSSFTSKTATSEVE 204


>At1g27200.1 68414.m03313 expressed protein contains Pfam PF01697:
           Domain of unknown function
          Length = 575

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 401 RVPNLICFHSKIRQL*FHKKRLPPLTYYDRILLWQHFL 288
           RVP L    S +    FH+ R PPL+  DR+    H L
Sbjct: 62  RVPTLSVLSSSMDS--FHRGRFPPLSVEDRVQFPDHLL 97


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 568 DESITISLICSPIPPSMFKSKPGSQELSVIEIAWFTNVHH 449
           D+   ++L+ +    S+   K   +EL  +EI W TNV H
Sbjct: 86  DQISLLALLVAIFRRSLISCKSNRRELCSMEIGWPTNVRH 125


>At4g28350.1 68417.m04058 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 649

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 566 IYNSSFSIDKQLLLAIASNFTNKSILAIVDQYTWS 670
           IYNS+F+    LLL  A+  +  SIL + +Q T+S
Sbjct: 27  IYNSNFTTTNTLLLGNATVKSPPSILTLTNQTTFS 61


>At3g22710.1 68416.m02865 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 326

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 540 HIKDIVILSSITQVLALINNYFWLLLLILPIRVFWLL 650
           ++ D     +I  ++   N Y+  +L +LPI + W+L
Sbjct: 260 NVNDDATSKNIVYIIGEDNGYYTEILFLLPINIHWVL 296


>At1g65740.1 68414.m07461 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 371

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 483 TLNSWDPGLDLNMEGGMGEHIKDIVILSSITQVL 584
           T+N W+ G  LN    MG H  DI++   +T VL
Sbjct: 182 TINYWN-GNVLNGFKQMGHHFSDIIVHKGVTYVL 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,936,553
Number of Sequences: 28952
Number of extensions: 322034
Number of successful extensions: 570
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)