Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D23
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    40   4e-04
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    27   5.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = -2

Query: 666 PXFXPPPXFGGGXPXXPPPXEXGGXXPPPPPP 571
           P   P P  GG  P  PPP   G   PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 34.3 bits (75), Expect = 0.025
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 627 PXXPPPXEXGGXXPPPPPPXXGGGXP 550
           P  PP    GG  PPPPPP   G  P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGP 775



 Score = 33.5 bits (73), Expect = 0.044
 Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -2

Query: 666 PXFXPPPXFGGGXPXXPPPXE-XGGXXPPPPPP 571
           P   PPP    G P  PPP     G  PPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 616 PPPXVXGXXPPPPPP 572
           P P V G  PPPPPP
Sbjct: 347 PTPQVQGSRPPPPPP 361


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 651 PPXFGGGXPXXPPPXEXGGXXPPPPPP 571
           PP  G   P  PPP       PPPPPP
Sbjct: 5   PP--GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = -1

Query: 619 PPPPXVXGXXPP--PPPPXXXG 560
           PPPP   G  PP  PPPP   G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 636 GGXPXXPPPXEXGGXXPPPPPPXXG 562
           G  P  PPP        PPPPP  G
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 654  PPPXFGGGXPXXPPPXEXGGXXPPPPP 574
            PPP      P   PP   G    PPPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 654 PPPXFGGGXPXXPPPXEXGGXXPPPPPP 571
           PPP         P P + G   PPPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQ-GRSAPPPPPP 366


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 618 PPPXEXGGXXPPPPPPXXGGGXPXFF 541
           PPP        PPP    GG  P FF
Sbjct: 33  PPPAPSRVQQAPPPTAVQGGSSPGFF 58


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
 Frame = -2

Query: 654 PPPXF---GGGXPXXPPPXEXGGXXPPPPPP 571
           PPP F       P    P +     PPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,640
Number of Sequences: 5004
Number of extensions: 26018
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)