Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D22
         (968 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical pr...    30   2.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   3.8  
U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    29   5.0  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    29   5.0  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 490 PPXKKGXXXGGXFXXXPPPXSXXGPGFXGGXGG-XPPPXGG 609
           PP + G    G F   PPP +   P   GG GG  PPP GG
Sbjct: 380 PPPQSGPP--GAFA--PPPSAFGAPQGPGGPGGYGPPPPGG 416


>Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical
           protein T19B10.4a protein.
          Length = 243

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +1

Query: 541 PPXSXXGPGFXGGXGGXPPPXGGXLXFXXXXXXXXXXKKNXXXQXXPXRG 690
           PP    GPG  GG G   PP G    F          K N      P  G
Sbjct: 70  PPFGPMGPGGPGGPGFMGPPNGNMNFFNGQNRRNGSGKNNGNRNGAPPSG 119


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/79 (25%), Positives = 21/79 (26%)
 Frame = +1

Query: 364 PXXXPKXPGKRXXPPXXXPPXXSXFXRXXXXXXXXXXXXXTXPPXKKGXXXGGXFXXXPP 543
           P   P  P     PP   P                       PP +     G      PP
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320

Query: 544 PXSXXGPGFXGGXGGXPPP 600
           P S  GP   GG    PPP
Sbjct: 321 PPSRFGPPGMGGMPPPPPP 339


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/79 (25%), Positives = 21/79 (26%)
 Frame = +1

Query: 364 PXXXPKXPGKRXXPPXXXPPXXSXFXRXXXXXXXXXXXXXTXPPXKKGXXXGGXFXXXPP 543
           P   P  P     PP   P                       PP +     G      PP
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330

Query: 544 PXSXXGPGFXGGXGGXPPP 600
           P S  GP   GG    PPP
Sbjct: 331 PPSRFGPPGMGGMPPPPPP 349


>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +1

Query: 490 PPXKKGXXXG-GXFXXXPPPXSXXGPGFXGGXGGXPPPXGG 609
           PP   G   G G     P      GP   GG GG PP  GG
Sbjct: 167 PPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGG 207


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +1

Query: 490 PPXKKGXXXG-GXFXXXPPPXSXXGPGFXGGXGGXPPPXGG 609
           PP   G   G G     P      GP   GG GG PP  GG
Sbjct: 447 PPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGG 487


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,591,884
Number of Sequences: 27780
Number of extensions: 85243
Number of successful extensions: 274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)