Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D19
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...   155   8e-39
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    36   0.008
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    36   0.010
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    33   0.055
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    30   0.51 
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    27   3.6  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   8.3  

>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score =  155 bits (376), Expect = 8e-39
 Identities = 77/159 (48%), Positives = 101/159 (63%), Gaps = 5/159 (3%)
 Frame = +3

Query: 204 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 383
           + +A     K TLP LPY YNALEP +S  IM LHH KHH TY+NNLN A+EKLA     
Sbjct: 16  VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74

Query: 384 GDIDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAVEKDFGSWDNL 548
            D++  + L  A+KFNGGGHINHS+FW  L+P    GGKP  S  L KA+   +GS ++ 
Sbjct: 75  -DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133

Query: 549 KNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPL 665
           + +++ A  ++QGSGW WL  +K    L+I T  NQD +
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTI 171



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +1

Query: 688 PLFGIDVWEHAYYLQYKNVRADYVKAIFDVAXWNDISQRY 807
           P+ GID WEHAYY QY+N +A+Y KAI++V  W +   RY
Sbjct: 176 PIIGIDAWEHAYYPQYENRKAEYFKAIWNVINWKEAESRY 215


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = +3

Query: 444 INHSIFWHNL-SPNG-GKPSDV----LTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWL 605
           +NH  F+  L SP      +D+    L   ++  FGS+  LK+Q+     +V G GW WL
Sbjct: 76  VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135

Query: 606 GYNKQMKKLQIATCQN 653
            Y+ +     +    N
Sbjct: 136 VYSPEKSLFSLLCTYN 151



 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 688 PLFGIDVWEHAYYLQY-KNVRADYVKAIFDVAXWNDISQRYE 810
           PL  +++W++AY   Y  N +  Y+   +D+  W  ++ R++
Sbjct: 172 PLLCVNLWQYAYLDDYGLNGKKMYITKWWDMINWTVVNNRFQ 213


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 688 PLFGIDVWEHAYYLQYKNV-RADYVKAIFDVAXWNDISQRYEKAL 819
           P+  + +W HAYY  Y  + R+ Y+   FD   W+ I +R   +L
Sbjct: 223 PILNLCLWNHAYYKDYGLLNRSRYIDTWFDCIDWSVIEERLTNSL 267



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 13/137 (9%)
 Frame = +3

Query: 234 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 407
           HT+P L  + N L P+ S E + +   +H    +  LN  V   +L  +     I     
Sbjct: 39  HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96

Query: 408 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAVEKDFGSWDNLKN 554
           L   A   +F    + NH  F   +             + +  + KAV ++FGS +NL +
Sbjct: 97  LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156

Query: 555 QLSTASVAVQGSGWGWL 605
           ++   +    G+ W W+
Sbjct: 157 KIHELASNSFGACWLWI 173


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 33.1 bits (72), Expect = 0.055
 Identities = 32/110 (29%), Positives = 47/110 (42%)
 Frame = +3

Query: 225 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 404
           RQKHT P  P   +A          S HH  HH+   N L    EK      K + ++  
Sbjct: 97  RQKHTAPATPIPVSA----------SRHHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142

Query: 405 NLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKN 554
           + +P+  F  G  IN+ I   N S +   P +  +  + K   S+ +LKN
Sbjct: 143 SESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDIHKS-QSYQHLKN 189


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 315 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 488
           K+HA           K+ QA  K   D  +N+A  + ++N     N+ +FW  +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 673 PLDWSPLFGIDVWEHAYYLQYKNVRADYVKAIFDVAXWNDIS 798
           P+D +  +G  V+  A Y Q +N   D++  + D   W+ I+
Sbjct: 71  PIDVAVGYGSGVFRQAGYSQKENPMIDFIFQVEDPVKWHKIN 112


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 413 CKVDNGVDITFSLCLCEFLFSNV 345
           C VD+  +I+ SLC  EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,483,645
Number of Sequences: 5004
Number of extensions: 74196
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)