Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_D19
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 130 1e-30
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 84 2e-16
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 71 9e-13
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 30 2.9
09_04_0193 - 15492102-15492746,15492833-15492946,15493042-154933... 29 3.8
06_01_0286 - 2094920-2097805 29 3.8
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 130 bits (314), Expect = 1e-30
Identities = 83/195 (42%), Positives = 104/195 (53%), Gaps = 31/195 (15%)
Frame = +3
Query: 204 IRVAGASRQKHT--LPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQ 377
+ A A+R T LP+LPY+Y ALEP IS EIM LHH KHHATY+ N N A E+L A
Sbjct: 19 LAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAV 78
Query: 378 AKGDIDTIINLAPALKFNGGGHINH------------SIFW--------------HNLSP 479
AKGD I++L A+KFNGGG S F+ L
Sbjct: 79 AKGDAPAIVHLQSAIKFNGGGEAKSRPPYPFLAYGFLSFFFFVLFIAGDAGGGGSEELGG 138
Query: 480 NGG--KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQN 653
GG P L A+++DFGS++ L ++S A+QGSGW WL +K+ KKL + T N
Sbjct: 139 EGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTAN 198
Query: 654 QDPLQAT-TGLVPAL 695
QDPL LVP L
Sbjct: 199 QDPLVTKGANLVPLL 213
Score = 63.7 bits (148), Expect = 2e-10
Identities = 27/43 (62%), Positives = 30/43 (69%)
Frame = +1
Query: 688 PLFGIDVWEHAYYLQYKNVRADYVKAIFDVAXWNDISQRYEKA 816
PL GIDVWEHAYYLQYKNVR DY+ I+ V W + YE A
Sbjct: 211 PLLGIDVWEHAYYLQYKNVRPDYLSNIWKVMNWKYAGEVYENA 253
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 83.8 bits (198), Expect = 2e-16
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Frame = +3
Query: 249 LPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKG-DIDTIINLA---- 413
L + +ALEP IS+ + LH KH Y+++LN ++LA + G ++ +I A
Sbjct: 73 LVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNG 129
Query: 414 -PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQ 584
P ++N + NH FW ++ P GG P + + +EKDFGS+ N + + +++++
Sbjct: 130 NPLPEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLL 189
Query: 585 GSGWGWLGYNKQMKKLQIATCQN 653
GSGW WL ++ +K + QN
Sbjct: 190 GSGWVWLVLKRKERKFSVVHTQN 212
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 673 PLDWSPLFGIDVWEHAYYLQYKNVRADYVKAIFD-VAXWNDISQRYEKA 816
PL PL +D+WEHAYYL YK+ R YV D + W+ ++ R +A
Sbjct: 238 PLLLQPLINLDLWEHAYYLDYKDDRRMYVTNFIDHLVSWDTVTLRMMRA 286
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 71.3 bits (167), Expect = 9e-13
Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Frame = +3
Query: 249 LPYEYNALEPVISREIMSLHHSKHHATYINNLNV----AE-EKLAQAQAKGDIDTIINLA 413
LPY +ALEP IS+E + H H ++ LN +E E ++ Q A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188
Query: 414 PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQG 587
P F I NH +W ++ P GG KP + L K + +DFGS+D + Q A+ G
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFG 248
Query: 588 SGWGWLGY 611
SGW WL Y
Sbjct: 249 SGWVWLCY 256
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 413 CKVDNGVDITFSLCLCEFLFSNV*IVDISRVMFAVMKTHDFTAND 279
C VD V + + CEF V + DISR++F K +F ND
Sbjct: 108 CTVDGHVKL-YRSPFCEFCDEWVEVADISRLLFKFYKGIEFGEND 151
>09_04_0193 -
15492102-15492746,15492833-15492946,15493042-15493332,
15493412-15493720,15493815-15494552
Length = 698
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 661 LCRPPLDWSPLFGIDVWEHAYYLQYKNVRADYVK 762
L RP L I+ W H+ Y+ + + RADY++
Sbjct: 146 LRRPELHVPEAVEIEGWAHSAYISWMSFRADYIR 179
>06_01_0286 - 2094920-2097805
Length = 961
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 237 TLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 404
+L L +N L +I + SLH H NNL+ + +Q Q GD D I
Sbjct: 807 SLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQLQTLGDEDPYI 862
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,700,810
Number of Sequences: 37544
Number of extensions: 510542
Number of successful extensions: 1383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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