Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D19
         (895 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40642| Best HMM Match : Sod_Fe_N (HMM E-Value=3.8e-10)              95   7e-20
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   1e-15
SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 29   3.8  
SB_14229| Best HMM Match : VAR1 (HMM E-Value=5)                        29   5.1  
SB_48013| Best HMM Match : Keratin_B2 (HMM E-Value=0.0058)             29   5.1  
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           29   6.7  
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)                  28   8.9  

>SB_40642| Best HMM Match : Sod_Fe_N (HMM E-Value=3.8e-10)
          Length = 75

 Score = 95.1 bits (226), Expect = 7e-20
 Identities = 40/53 (75%), Positives = 47/53 (88%)
 Frame = +3

Query: 225 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 383
           R KHTLP+LPY+Y+ALEP I+ EIM LHHSKHHATY+NNLN+AEEK  +AQAK
Sbjct: 22  RAKHTLPDLPYDYDALEPTINTEIMRLHHSKHHATYVNNLNIAEEKCLEAQAK 74


>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 17/161 (10%)
 Frame = +3

Query: 228 QKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDI--DTI 401
           +K+TLPELPY+YN LEP I    + +HH  HHA Y   LN A ++  ++  + D+   +I
Sbjct: 245 EKYTLPELPYDYNELEPHIDEATLRVHHLGHHAAYTKKLNAALKEWRESGKEKDLASKSI 304

Query: 402 INL-----------APALKFNGGGHINHSIFWHNLSPNGGK----PSDVLTKAVEKDFGS 536
           + +              +  NGGG +NH+++W  +SPN       P+  +   ++K  G+
Sbjct: 305 VEILRNNEQIPDKWRTDVINNGGGFVNHALYWATMSPNPKSEPRTPTGKIGDLIDKSHGN 364

Query: 537 WDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQD 659
           +   K        ++ GSG+ WL  +     L I    NQ+
Sbjct: 365 FSMFKQWFDEQVNSMFGSGYTWLCQDVTSGFLTILNMGNQE 405



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = +1

Query: 685 SPLFGIDVWEHAYYLQYKNVRADYVKAIFDVAXWNDISQRYE 810
           +P+  ID+WEHA+YL+++N R  YV + + +  W  +++  E
Sbjct: 413 NPVLVIDLWEHAFYLKHQNKRPGYVHSWWHLVDWERVNELLE 454


>SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 639 ATCQNQDPLQATTGLVPALRNRCMGARVLSSVQERSCRL 755
           +TC+      +T+ ++PA+R+RC+G R+ +   E  C++
Sbjct: 74  STCRLILCCNSTSKVIPAIRSRCLGVRIPAPSVEEICQI 112


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 678  GLVPALRNRCMGARVLSSVQERSCRLRESYFRCSXLE*YISEI 806
            G + A   + + ARV S V++R   L  S F CS +E Y+ +I
Sbjct: 3042 GRLTANSRKLLLARVCSVVEQRIPALLNSSFLCSHIEDYVDDI 3084


>SB_14229| Best HMM Match : VAR1 (HMM E-Value=5)
          Length = 356

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 398 HYQPCTSLEIQWWWSHQPLDLLAQPVT 478
           HY      ++ WW SH PLD  A+  T
Sbjct: 18  HYSNHREAQVGWWLSHWPLDTAARART 44


>SB_48013| Best HMM Match : Keratin_B2 (HMM E-Value=0.0058)
          Length = 445

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 639 ATCQNQDPLQATTGLVPALRNRCMGARVLSSVQERSCRLRESYFRCSXLE 788
           ATC N   LQAT      L   CM A  L +    + +L+ +    S LE
Sbjct: 279 ATCMNASQLQATCMNAGQLEATCMNASQLEATCMNASQLQATCMNASQLE 328


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 181 CHKGLDH*FELPVLLARSILCQSFRTSTMHWSRSLAVKS*VFIT 312
           CH+   H +  PV+L+R ++   F TS  H   SL V S V ++
Sbjct: 730 CHQWFCHGWLSPVVLSRVVVTSGFVTSGCHEWLSLVVLSPVVLS 773


>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
          Length = 925

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = +3

Query: 438 GHINHSIFWH-NLSPNGGKPS-DVLTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGY 611
           G I+ S+F+   L P+  + S ++ +  V      +  L  + S+  VAV G G  W   
Sbjct: 493 GVISVSVFFAVQLQPDEEQGSTNIESTPVRSHSSLYSKLTRRFSSYQVAVWGKGTNWYSI 552

Query: 612 NKQMKKLQIATCQNQDP--LQATTGLVPALRNRC 707
            KQ++KL     Q      +    GL P  R  C
Sbjct: 553 -KQLRKLAFRPSQEDKVVIVNLIWGLQPQDRRSC 585


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,048,194
Number of Sequences: 59808
Number of extensions: 570567
Number of successful extensions: 1960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)