BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fdpeP01_F_D19 (895 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondria... 181 5e-46 At3g56350.1 68416.m06266 superoxide dismutase [Mn], putative / m... 166 2e-41 At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i... 100 3e-21 At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron supero... 91 9e-19 At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast ... 84 1e-16 At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast ... 84 1e-16 At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast ... 84 1e-16 At1g11170.2 68414.m01279 expressed protein contains Pfam profile... 30 2.4 At1g11170.1 68414.m01280 expressed protein contains Pfam profile... 30 2.4 At1g61240.2 68414.m06901 expressed protein contains Pfam profile... 29 3.1 At1g61240.1 68414.m06900 expressed protein contains Pfam profile... 29 3.1 At1g31140.1 68414.m03810 MADS-box protein (AGL63) similar to gb|... 29 4.2 At3g11390.1 68416.m01387 DC1 domain-containing protein contains ... 29 5.5 At1g11620.1 68414.m01334 F-box family protein contains F-box dom... 29 5.5 At1g08040.1 68414.m00878 expressed protein contains Pfam profile... 29 5.5 At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 28 7.3 At2g37890.1 68415.m04651 mitochondrial substrate carrier family ... 28 7.3 At1g32950.1 68414.m04058 subtilase family protein contains simil... 28 7.3 At1g08210.1 68414.m00907 aspartyl protease family protein contai... 28 7.3 >At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondrial (SODA) / manganese superoxide dismutase (MSD1) identical to manganese superoxide dismutase [Arabidopsis thaliana] gi|3273751|gb|AAC24832 Length = 231 Score = 181 bits (441), Expect = 5e-46 Identities = 89/168 (52%), Positives = 112/168 (66%), Gaps = 5/168 (2%) Frame = +3 Query: 201 LIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQA 380 L+R+ G Q TLP+LPY+Y ALEP IS EIM +HH KHH Y+ N N A E+L QA Sbjct: 22 LLRIRGI--QTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVN 79 Query: 381 KGDIDTIINLAPALKFNGGGHINHSIFWHNLSPN---GGK-PSDVLTKAVEKDFGSWDNL 548 KGD T++ L A+KFNGGGH+NHSIFW NL+P+ GG+ P L A++ FGS + L Sbjct: 80 KGDASTVVKLQSAIKFNGGGHVNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEGL 139 Query: 549 KNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTG-LVP 689 ++S AVQGSGW WLG +K++KKL + T NQDPL G LVP Sbjct: 140 VKKMSAEGAAVQGSGWVWLGLDKELKKLVVDTTANQDPLVTKGGSLVP 187 Score = 65.3 bits (152), Expect = 5e-11 Identities = 27/42 (64%), Positives = 32/42 (76%) Frame = +1 Query: 688 PLFGIDVWEHAYYLQYKNVRADYVKAIFDVAXWNDISQRYEK 813 PL GIDVWEHAYYLQYKNVR +Y+K ++ V W S+ YEK Sbjct: 187 PLVGIDVWEHAYYLQYKNVRPEYLKNVWKVINWKYASEVYEK 228 >At3g56350.1 68416.m06266 superoxide dismutase [Mn], putative / manganese superoxide dismutase, putative similar to manganese superoxide dismutase (MSD1) [Arabidopsis thaliana] gi|3273751|gb|AAC24832 Length = 241 Score = 166 bits (404), Expect = 2e-41 Identities = 80/164 (48%), Positives = 105/164 (64%), Gaps = 6/164 (3%) Frame = +3 Query: 222 SRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTI 401 S + +LP+LPY Y+ALEP IS EIM LHH KHH TY+ N A L A A GD ++ Sbjct: 32 SMKTASLPDLPYAYDALEPAISEEIMRLHHQKHHQTYVTQYNKALNSLRSAMADGDHSSV 91 Query: 402 INLAPALKFNGGGHINHSIFWHNLSP---NGGK-PSDVLTKAVEKDFGSWDNLKNQLSTA 569 + L +KFNGGGH+NH+IFW NL+P GGK P D L A++ FGS + L +++ Sbjct: 92 VKLQSLIKFNGGGHVNHAIFWKNLAPVHEGGGKPPHDPLASAIDAHFGSLEGLIQKMNAE 151 Query: 570 SVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTG--LVPAL 695 AVQGSGW W G ++++K+L + T NQDPL T G LVP + Sbjct: 152 GAAVQGSGWVWFGLDRELKRLVVETTANQDPL-VTKGSHLVPLI 194 Score = 60.1 bits (139), Expect = 2e-09 Identities = 25/42 (59%), Positives = 30/42 (71%) Frame = +1 Query: 688 PLFGIDVWEHAYYLQYKNVRADYVKAIFDVAXWNDISQRYEK 813 PL GIDVWEHAYY QYKN RA+Y+K I+ V W + +EK Sbjct: 192 PLIGIDVWEHAYYPQYKNARAEYLKNIWTVINWKYAADVFEK 233 >At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron superoxide dismutase, putative similar to Fe-superoxide dismutase precursor [Medicago sativa] gi|16974682|gb|AAL32441 Length = 305 Score = 99.5 bits (237), Expect = 3e-21 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 8/175 (4%) Frame = +3 Query: 186 QRIGSLIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKL 365 +R+G+ + V+G L PY +ALEP +SRE + H KHH TY+ NLN ++ L Sbjct: 37 RRLGTKVAVSGVITAGFELKPPPYPLDALEPHMSRETLDYHWGKHHKTYVENLN--KQIL 94 Query: 366 AQAQAKGDIDTII-------NLAPALKFNGGGHINHSIFWHNLSP-NGGKPSDVLTKAVE 521 ++ ++ N+ PA N NH FW ++ P GGKP+ L + +E Sbjct: 95 GTDLDALSLEEVVLLSYNKGNMLPAFN-NAAQAWNHEFFWESIQPGGGGKPTGELLRLIE 153 Query: 522 KDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLV 686 +DFGS++ + +A+ + GSGW WL Y + +L +A N P + LV Sbjct: 154 RDFGSFEEFLERFKSAAASNFGSGWTWLAY--KANRLDVANAVNPLPKEEDKKLV 206 Score = 55.2 bits (127), Expect = 6e-08 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = +1 Query: 679 DWSPLFGIDVWEHAYYLQYKNVRADYVKAIFD-VAXWNDISQRYEKAL 819 D+SPL ID WEHAYYL ++N RA+Y+ + + W +S R E A+ Sbjct: 220 DYSPLLTIDTWEHAYYLDFENRRAEYINTFMEKLVSWETVSTRLESAI 267 >At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron superoxide dismutase 3 (FSD3) identical to iron superoxide dismutase 3 [Arabidopsis thaliana] gi|3273757|gb|AAC24834 Length = 263 Score = 91.1 bits (216), Expect = 9e-19 Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 6/140 (4%) Frame = +3 Query: 252 PYEYNALEPVISREIMSLHHSKHHATYINNLNVA---EEKLAQAQAKGDIDTIINLA-PA 419 PY +ALEP +SR + +H KHH Y++NLN +++L + I N P Sbjct: 56 PYPLDALEPYMSRRTLEVHWGKHHRGYVDNLNKQLGKDDRLYGYTMEELIKATYNNGNPL 115 Query: 420 LKFNGGGHI-NHSIFWHNLSPNGGK-PSDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSG 593 +FN + NH FW ++ P GG P + + ++KDFGS+ N + + + A++ GSG Sbjct: 116 PEFNNAAQVYNHDFFWESMQPGGGDTPQKGVLEQIDKDFGSFTNFREKFTNAALTQFGSG 175 Query: 594 WGWLGYNKQMKKLQIATCQN 653 W WL ++ ++L++ N Sbjct: 176 WVWLVLKREERRLEVVKTSN 195 Score = 49.6 bits (113), Expect = 3e-06 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = +1 Query: 673 PLDWS--PLFGIDVWEHAYYLQYKNVRADYVKAIFD-VAXWNDISQRYEKA 816 PL W P+ +DVWEH+YYL YKN RA Y+ + + WN R +A Sbjct: 199 PLVWDDIPIICVDVWEHSYYLDYKNDRAKYINTFLNHLVSWNAAMSRMARA 249 >At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast (SODB) / iron superoxide dismutase (FSD1) identical to Fe-superoxide dismutase [Arabidopsis thaliana] gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935 Length = 212 Score = 83.8 bits (198), Expect = 1e-16 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 5/156 (3%) Frame = +3 Query: 213 AGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKG 386 + A + L P+ +ALEP +S++ + H KHH Y++NL V +L + Sbjct: 4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEH 63 Query: 387 DIDTIINLAPALK-FNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQ 557 I + N L FN NH FW ++ P GG KPS L +E+DF S++ + Sbjct: 64 IIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEE 123 Query: 558 LSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPL 665 + A+ G+GW WL Y+ + K+ + T +PL Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLKV-VKTPNAVNPL 158 Score = 51.6 bits (118), Expect = 7e-07 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Frame = +1 Query: 688 PLFGIDVWEHAYYLQYKNVRADYVKAIF-DVAXWNDISQRYEKA 816 PL IDVWEHAYYL ++N R DY+K ++ W +S R E A Sbjct: 164 PLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAA 207 >At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast (SODB) / iron superoxide dismutase (FSD1) identical to Fe-superoxide dismutase [Arabidopsis thaliana] gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935 Length = 212 Score = 83.8 bits (198), Expect = 1e-16 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 5/156 (3%) Frame = +3 Query: 213 AGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKG 386 + A + L P+ +ALEP +S++ + H KHH Y++NL V +L + Sbjct: 4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEH 63 Query: 387 DIDTIINLAPALK-FNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQ 557 I + N L FN NH FW ++ P GG KPS L +E+DF S++ + Sbjct: 64 IIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEE 123 Query: 558 LSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPL 665 + A+ G+GW WL Y+ + K+ + T +PL Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLKV-VKTPNAVNPL 158 Score = 51.6 bits (118), Expect = 7e-07 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Frame = +1 Query: 688 PLFGIDVWEHAYYLQYKNVRADYVKAIF-DVAXWNDISQRYEKA 816 PL IDVWEHAYYL ++N R DY+K ++ W +S R E A Sbjct: 164 PLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAA 207 >At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast (SODB) / iron superoxide dismutase (FSD1) identical to Fe-superoxide dismutase [Arabidopsis thaliana] gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935 Length = 212 Score = 83.8 bits (198), Expect = 1e-16 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 5/156 (3%) Frame = +3 Query: 213 AGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKG 386 + A + L P+ +ALEP +S++ + H KHH Y++NL V +L + Sbjct: 4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEH 63 Query: 387 DIDTIINLAPALK-FNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQ 557 I + N L FN NH FW ++ P GG KPS L +E+DF S++ + Sbjct: 64 IIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEE 123 Query: 558 LSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPL 665 + A+ G+GW WL Y+ + K+ + T +PL Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLKV-VKTPNAVNPL 158 Score = 51.6 bits (118), Expect = 7e-07 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Frame = +1 Query: 688 PLFGIDVWEHAYYLQYKNVRADYVKAIF-DVAXWNDISQRYEKA 816 PL IDVWEHAYYL ++N R DY+K ++ W +S R E A Sbjct: 164 PLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAA 207 >At1g11170.2 68414.m01279 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707) Length = 335 Score = 29.9 bits (64), Expect = 2.4 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%) Frame = +2 Query: 428 QWW---WSHQPLDLLAQPVTKWWQA 493 +WW WS + + ++AQ TKWW A Sbjct: 157 KWWDLEWSSKSIHIVAQNQTKWWFA 181 >At1g11170.1 68414.m01280 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707) Length = 438 Score = 29.9 bits (64), Expect = 2.4 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%) Frame = +2 Query: 428 QWW---WSHQPLDLLAQPVTKWWQA 493 +WW WS + + ++AQ TKWW A Sbjct: 157 KWWDLEWSSKSIHIVAQNQTKWWFA 181 >At1g61240.2 68414.m06901 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707) Length = 425 Score = 29.5 bits (63), Expect = 3.1 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%) Frame = +2 Query: 428 QWW---WSHQPLDLLAQPVTKWWQA 493 QWW WS + + ++A TKWW A Sbjct: 154 QWWDLEWSSKAIHIVAHNQTKWWFA 178 >At1g61240.1 68414.m06900 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707) Length = 425 Score = 29.5 bits (63), Expect = 3.1 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%) Frame = +2 Query: 428 QWW---WSHQPLDLLAQPVTKWWQA 493 QWW WS + + ++A TKWW A Sbjct: 154 QWWDLEWSSKAIHIVAHNQTKWWFA 178 >At1g31140.1 68414.m03810 MADS-box protein (AGL63) similar to gb|Y15008 M79 protein (MADS box) from oryza sativa and contains SRF transcription factor domain PF|00319 Length = 213 Score = 29.1 bits (62), Expect = 4.2 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +3 Query: 582 QGSGWGWLGYNKQMKKLQIATCQNQ-DPLQATTGLVPALR 698 QGS W L + + Q+ TCQ Q DP A G VP LR Sbjct: 166 QGSSWEQLMWQAER---QMMTCQRQKDPAPANEGGVPFLR 202 >At3g11390.1 68416.m01387 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 710 Score = 28.7 bits (61), Expect = 5.5 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -1 Query: 664 RGSWFWHVAICNFFICLL*PSQPQP 590 +G+WF+H ICNF + L Q P Sbjct: 241 QGNWFYHCPICNFCLDLSCSQQSVP 265 >At1g11620.1 68414.m01334 F-box family protein contains F-box domain Pfam:PF00646 Length = 363 Score = 28.7 bits (61), Expect = 5.5 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +3 Query: 495 SDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKKL 632 SD V+ +FG +D L +SV ++G+ + WLGYNK +L Sbjct: 181 SDSWKVVVDTNFGGFDGLP----LSSVCLRGTPY-WLGYNKSGNEL 221 >At1g08040.1 68414.m00878 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707) Length = 382 Score = 28.7 bits (61), Expect = 5.5 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +2 Query: 398 HYQPCTSLEIQWWWSHQPLDLLAQPVTKWWQA 493 HY T+ Q+ WS + + A+ TKWW A Sbjct: 155 HYDGRTTEWDQFEWSKNAIHISAKKQTKWWYA 186 >At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding bromodomain-containing protein low similarity to SP|P51123 Transcription initiation factor TFIID 230 kDa subunit {Drosophila melanogaster}; contains Pfam profiles: PF00439 bromodomain, PF00240: Ubiquitin family Length = 1700 Score = 28.3 bits (60), Expect = 7.3 Identities = 15/64 (23%), Positives = 29/64 (45%) Frame = +3 Query: 216 GASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDID 395 G ++H E ++ EPV+ +E + H K A+ + N N + Q +K D + Sbjct: 27 GGQEKEHVPVEKSFDSEEREPVVLKEEKPVKHEK-EASILGNKNQMDTGDVQEVSKNDFE 85 Query: 396 TIIN 407 ++ Sbjct: 86 ATLD 89 >At2g37890.1 68415.m04651 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein Length = 337 Score = 28.3 bits (60), Expect = 7.3 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +3 Query: 381 KGDIDTIINLAPALKFNGGGHINHSIFWHNLSPN 482 KG T++ + P+L N + + +FWH+ PN Sbjct: 206 KGLGATLLGVGPSLAINFAAYESMKLFWHSHRPN 239 >At1g32950.1 68414.m04058 subtilase family protein contains similarity to SBT1 GI:1771160 from [Lycopersicon esculentum] Length = 773 Score = 28.3 bits (60), Expect = 7.3 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -1 Query: 532 PKSFSTALVRTSEGLPPFGDRLCQKIEWLM*PPPLNFKAG 413 P +F +A+V T+ PFG+++ + L P P ++ G Sbjct: 573 PAAFRSAIVTTAWRTDPFGEQIAAESSSLKVPDPFDYGGG 612 >At1g08210.1 68414.m00907 aspartyl protease family protein contains Pfam profile PF00026: Eukaryotic aspartyl protease; similar to CND41, chloroplast nucleoid DNA binding protein (GI:2541876) {Nicotiana tabacum} Length = 492 Score = 28.3 bits (60), Expect = 7.3 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -3 Query: 536 GSKVFLNGFGENIRRLATIW*QVVPKDRVVDVTTTIEFQGWCKVDNGVDITFS 378 GS ++ GF R TI +V KD+VV + GW + D +++ S Sbjct: 395 GSSIWCIGFQRMSHRRITILGDLVLKDKVVVYDLVRQRIGWAEYDCSLEVNVS 447 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,295,032 Number of Sequences: 28952 Number of extensions: 403998 Number of successful extensions: 1144 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1088 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1132 length of database: 12,070,560 effective HSP length: 81 effective length of database: 9,725,448 effective search space used: 2100696768 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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