Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_D18
(920 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.057
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.23
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.30
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.40
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.53
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.057
Identities = 32/146 (21%), Positives = 32/146 (21%)
Frame = +2
Query: 383 PXKPPXNRGGXGXXXXXPXXGGGXPPPPXXRGXPHTAPXXXPGXPXRGXPGXXXXXXPPA 562
P PP R P G PPPP R P T P R PPA
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN------PPA 390
Query: 563 PXXXXXXPPXXPPXXXPXXXXXXXXXXXXPXXXXXPXXXXAXXPPXXXXXXXXXXXGXXX 742
P P P P P P PP
Sbjct: 391 P--PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Query: 743 PPPXXPXXXXXXXXXPXXXXXPXXXP 820
PP P P P P
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAP 474
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.23
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 435 PXXGGGXPPPPKXGXPPTXPPXXPP 509
P GG PPPP G PP PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 216 PPPKXXXXXGPXPXPXPPPPPGL 284
PPP G P P PPPPP +
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAV 785
Score = 29.9 bits (64), Expect = 0.53
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +2
Query: 455 PPPPXXRGXPHTAPXXXPGXPXRGXPGXXXXXXPPAPXXXXXXPPXXPP 601
PPPP P AP P P G PP PP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 216 PPPKXXXXXGPXPXPXPPPPPGLXG 290
PPP GP P P PPP G
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 219 PPKXXXXXGPXPXPXPPPPPGLXG 290
PP GP P PPPPPG+ G
Sbjct: 752 PPPAPIMGGPPP---PPPPPGVAG 772
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 216 PPPKXXXXXGPXPXPXPPPPP 278
PPP P P P P PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPP 754
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = +2
Query: 362 PPPPGXXPXKPPXNRGGXGXXXXXPXXGGGXPPPPXXRGXPHTAPXXXPGXP 517
PPPP P P GG PPPP G P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGG-PPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Frame = +1
Query: 445 GGGPPPPXXQGX----PPHXPPXXPRXTXXG 525
GG PPPP G PP PP P + G
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 216 PPPKXXXXXGPXPXPXPPPPPGLXG 290
PP P P P PPP P + G
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGG 760
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = -2
Query: 604 GXGXXGGXXXXXGGRGGXXXXXXPXXXPXXXXGGXXGGXVGGXPXXGGG 458
G G GG GG GG GG GG GG GGG
Sbjct: 209 GFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = -1
Query: 509 RGXXGGXCGGXPXFXGGGGPPPXXXGXXXXXHXPPGFXGVXGGXXPGGGG 360
RG GG GG F GG G PP G G GG GGG
Sbjct: 183 RGHNGGGFGG---FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 27.5 bits (58), Expect = 2.8
Identities = 25/80 (31%), Positives = 25/80 (31%)
Frame = -1
Query: 599 GGVXGGXXPXXXARGXXXXXXXXGXPXXVXRGXXGGXCGGXPXFXGGGGPPPXXXGXXXX 420
GG GG P G G G GG GG GG G P G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHG-GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG 252
Query: 419 XHXPPGFXGVXGGXXPGGGG 360
GF G GG G GG
Sbjct: 253 -----GFGGGPGGFGGGPGG 267
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.40
Identities = 30/133 (22%), Positives = 32/133 (24%)
Frame = +2
Query: 215 PXPKXXXXXRPXSAXPXPSPPRPXRXXXXXTKXXTXXKRRPKXXKXXXXPPPPGXXPXKP 394
P PK P +PP P T PK PPP P
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSE 1072
Query: 395 PXNRGGXGXXXXXPXXGGGXPPPPXXRGXPHTAPXXXPGXPXRGXPGXXXXXXPPAPXXX 574
+ P G PP P P A P P PP P
Sbjct: 1073 IPSIPAPSGAPPVPAP-SGIPPVP----KPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS 1127
Query: 575 XXXPPXXPPXXXP 613
PP P P
Sbjct: 1128 VAAPPVPVPSGAP 1140
Score = 29.9 bits (64), Expect = 0.53
Identities = 26/122 (21%), Positives = 28/122 (22%), Gaps = 3/122 (2%)
Frame = +2
Query: 245 PXSAXPXPSPPRPXRXXXXXTKXXTXXKRRPKXXKXXXXPPPPGXXPXKPPXNRGGXGXX 424
P S+ PS P P P PP P PP +
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112
Query: 425 XXXPXXGGGXPPPPXXRGXPHTAPXXXPGXP---XRGXPGXXXXXXPPAPXXXXXXPPXX 595
G P P P P P P P PP P PP
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 596 PP 601
P
Sbjct: 1173 AP 1174
Score = 27.5 bits (58), Expect = 2.8
Identities = 22/97 (22%), Positives = 23/97 (23%), Gaps = 4/97 (4%)
Frame = +2
Query: 335 PKXXKXXXXPPPPGXXPXKPPXNRGGXGXXXXXPXXGGGXPPPPXXRGXPHTAPXXXPGX 514
P K PP PP + G P P P AP P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 515 PXRGXPGXXXXXX----PPAPXXXXXXPPXXPPXXXP 613
P PP P PP PP P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Frame = +3
Query: 435 PXXGGGXPPPPKX--GXPPTXPPXXP---PXXXXGXXXGXXXXXXPPRPPXXXXXPPHXP 599
P G PP PK G PP PP P G PP P PP P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP-VP 1230
Query: 600 XP 605
P
Sbjct: 1231 VP 1232
Score = 26.6 bits (56), Expect = 4.9
Identities = 23/97 (23%), Positives = 24/97 (24%), Gaps = 4/97 (4%)
Frame = +2
Query: 335 PKXXKXXXXPPPPGXXPXKPPXNRGGXGXXXXXPXXGGGXPPPPXXRGXPHTAPXXX-PG 511
P K PP PP + G P P P AP P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 512 XPXRGX---PGXXXXXXPPAPXXXXXXPPXXPPXXXP 613
P P PP P PP PP P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 26.2 bits (55), Expect = 6.5
Identities = 29/134 (21%), Positives = 30/134 (22%), Gaps = 1/134 (0%)
Frame = +2
Query: 215 PXPKXXXXXRPXSAXPXPSPPRPXRXXXXXTKXXTXXKRRPKXXKXXXXPPP-PGXXPXK 391
P P P S P PP T R P K PP P
Sbjct: 972 PLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADA 1031
Query: 392 PPXNRGGXGXXXXXPXXGGGXPPPPXXRGXPHTAPXXXPGXPXRGXPGXXXXXXPPAPXX 571
PP P PP P +AP P PP P
Sbjct: 1032 PPIPVPSTAPPVPIPT---STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAP 1088
Query: 572 XXXXPPXXPPXXXP 613
P P P
Sbjct: 1089 SGIPPVPKPSVAAP 1102
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.53
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 216 PPPKXXXXXGPXPXPXPPPPPG 281
PPP P P PPPPPG
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPG 31
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +3
Query: 444 GGGXPPPPKXGX-PPTXPPXXPP 509
G PPPP G PP+ PP PP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 216 PPPKXXXXXGPXPXPXPPPPPGL 284
PP P P P PPPPP L
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTL 246
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 456 PPPPKXGXPPTXPPXXPP 509
PPPP P PP PP
Sbjct: 1715 PPPPSAPPMPAGPPSAPP 1732
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,908
Number of Sequences: 5004
Number of extensions: 24022
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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