Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D18
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.026
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 0.026
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 450 GXPPPPKXGXPPTXPPXXPP 509
           G PP P  G PP  PP  PP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56



 Score = 25.0 bits (52), Expect = 0.97
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = +2

Query: 482 PHTAPXXXPGXPXRGXPGXXXXXXPPAPXXXXXXPPXXPPXXXP 613
           P  +P   P  P RG P       PP        PP  PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPG------GPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 433 PXXXGGGPPPPXXQGXPPHXPP 498
           P     GPPP    G PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 365 PPPGXXPXKPP 397
           PPPG  P  PP
Sbjct: 46  PPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 252 PXPXPPPPP 278
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 246 PXPXPXPPPP 275
           P P P PPPP
Sbjct: 339 PKPAPPPPPP 348


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 12/44 (27%), Positives = 12/44 (27%)
 Frame = +2

Query: 434  PXXGGGXPPPPXXRGXPHTAPXXXPGXPXRGXPGXXXXXXPPAP 565
            P   GG P P      P       P    R   G      PP P
Sbjct: 1357 PSASGGRPVPERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTP 1400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,845
Number of Sequences: 438
Number of extensions: 6515
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)