Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D17
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   177   2e-45
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   177   2e-45
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   8.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   8.1  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   8.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   8.1  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  177 bits (431), Expect = 2e-45
 Identities = 78/106 (73%), Positives = 95/106 (89%)
 Frame = +2

Query: 179 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 358
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 359 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL 496
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSL 106



 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 33/72 (45%), Positives = 54/72 (75%)
 Frame = +3

Query: 456 KSRKISNTTATSPLXDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLI 635
           K + ++++   S L ++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ 
Sbjct: 94  KDKNVAHSGNVS-LDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQ 152

Query: 636 DDINSGALTIDE 671
            +I++G + I +
Sbjct: 153 KEIDNGEIEIPQ 164


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  177 bits (431), Expect = 2e-45
 Identities = 78/106 (73%), Positives = 95/106 (89%)
 Frame = +2

Query: 179 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 358
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 359 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL 496
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSL 106



 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 33/72 (45%), Positives = 54/72 (75%)
 Frame = +3

Query: 456 KSRKISNTTATSPLXDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLI 635
           K + ++++   S L ++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ 
Sbjct: 94  KDKNVAHSGNVS-LDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQ 152

Query: 636 DDINSGALTIDE 671
            +I++G + I +
Sbjct: 153 KEIDNGEIEIPQ 164


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 453 VKSRKISNTT-ATSPLXDVIGIAKIMRNRSMARY 551
           V  R + N   AT+P+ +  G AK +RN + +R+
Sbjct: 187 VVKRSVENQVLATNPIMEAFGNAKTIRNDNSSRF 220


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 460 LFTVTRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 353
           +FT+ R  LK   +   CR N +  GLS   C  +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 680 KHLFINGQSSAVDVINKIMWRPALHSTS 597
           K ++++ ++ A+D++NK M   A+ STS
Sbjct: 168 KTIYVSSETEALDILNKGMGSRAVASTS 195


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 483 ATSPLXDVIGIAKIMRNRSMARY 551
           AT+PL +  G AK +RN + +R+
Sbjct: 170 ATNPLLESFGCAKTLRNNNSSRH 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,053
Number of Sequences: 5004
Number of extensions: 55760
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)