Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D17
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        170   1e-42
02_05_0416 + 28791512-28792012                                        170   1e-42
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858...    31   1.6  
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414           29   3.7  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  170 bits (413), Expect = 1e-42
 Identities = 80/107 (74%), Positives = 95/107 (88%), Gaps = 1/107 (0%)
 Frame = +2

Query: 179 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 355
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 356 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL 496
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISL 107



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 35/57 (61%), Positives = 45/57 (78%)
 Frame = +3

Query: 495 LXDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 665
           L DVI IA+IMRNRSMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 107 LDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  170 bits (413), Expect = 1e-42
 Identities = 80/107 (74%), Positives = 95/107 (88%), Gaps = 1/107 (0%)
 Frame = +2

Query: 179 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 355
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 356 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL 496
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISL 107



 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 33/57 (57%), Positives = 44/57 (77%)
 Frame = +3

Query: 495 LXDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 665
           L DVI IA++MR RSMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 107 LDDVIEIARVMRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>11_04_0079 -
           13284869-13284929,13285518-13285639,13285749-13285820,
           13286048-13286200,13289510-13289709,13289745-13289947,
           13289991-13290181
          Length = 333

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 658 KAPLLMSSIRSCGGLPSTVHPTDCAVPRISF 566
           +APL   S+RSCG L   + P + ++PR+ +
Sbjct: 120 QAPLSPKSVRSCGPLKLVIEPYNGSLPRLHY 150


>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
          Length = 522

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 335 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 463
           W    + V   V +    + V+P+A A +IRA+ + P  R++Q
Sbjct: 33  WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,190,819
Number of Sequences: 37544
Number of extensions: 411624
Number of successful extensions: 1014
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)