Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D17
         (872 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...   168   4e-42
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...   168   4e-42
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)           168   4e-42
At4g31260.1 68417.m04437 hypothetical protein                          30   2.3  
At5g49470.2 68418.m06121 protein kinase family protein contains ...    29   3.1  
At5g49470.1 68418.m06122 protein kinase family protein contains ...    29   3.1  
At1g23600.1 68414.m02972 expressed protein contains Pfam profile...    29   4.1  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score =  168 bits (409), Expect = 4e-42
 Identities = 79/106 (74%), Positives = 94/106 (88%), Gaps = 1/106 (0%)
 Frame = +2

Query: 179 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 355
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 356 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIS 493
           V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNIS 106



 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 37/55 (67%), Positives = 45/55 (81%)
 Frame = +3

Query: 501 DVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 665
           DVI IAKIMR RS+A+ LSG+VKEILGT  SVGCTV+G+ P DL ++INSG + I
Sbjct: 109 DVIEIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDI 163


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score =  168 bits (409), Expect = 4e-42
 Identities = 79/106 (74%), Positives = 94/106 (88%), Gaps = 1/106 (0%)
 Frame = +2

Query: 179 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 355
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 356 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIS 493
           V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNIS 106



 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = +3

Query: 501 DVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 671
           DV  IA+IMR RS+A+ LSG+V+EILGT  SVGCTV+G+ P DL  +I  G + I E
Sbjct: 109 DVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPE 165


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score =  168 bits (409), Expect = 4e-42
 Identities = 79/106 (74%), Positives = 94/106 (88%), Gaps = 1/106 (0%)
 Frame = +2

Query: 179 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 355
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 356 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIS 493
           V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNIS 106



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/57 (56%), Positives = 42/57 (73%)
 Frame = +3

Query: 501 DVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 671
           DV  IA+IMR RS+A+ LSG+V+EILGT  SVGCTV+G+ P D+  +I  G + I E
Sbjct: 109 DVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPE 165


>At4g31260.1 68417.m04437 hypothetical protein 
          Length = 63

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 685 IRNIYSSMVKAPLLMSSIRSCGGLPSTV 602
           IR++Y   VK+ + +  IRSCGG+ ++V
Sbjct: 28  IRSLYPDKVKSEIPIQDIRSCGGVLASV 55


>At5g49470.2 68418.m06121 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 834

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +2

Query: 449 DRKKQKNIKHNGNISLXRCNRHCEDHEKQINGPVPFWLSKRDSWHSTVSWMYCGGQAAT 625
           +++KQ+  + N N S+   ++ CE  +   N P+ +W S   + +ST S   CG  +++
Sbjct: 413 EQQKQQAYQSNSNHSVKSESQACESIKASSNEPMGYW-SSSVNVNSTSSSSSCGSTSSS 470


>At5g49470.1 68418.m06122 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 483

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +2

Query: 449 DRKKQKNIKHNGNISLXRCNRHCEDHEKQINGPVPFWLSKRDSWHSTVSWMYCGGQAAT 625
           +++KQ+  + N N S+   ++ CE  +   N P+ +W S   + +ST S   CG  +++
Sbjct: 126 EQQKQQAYQSNSNHSVKSESQACESIKASSNEPMGYW-SSSVNVNSTSSSSSCGSTSSS 183


>At1g23600.1 68414.m02972 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220; expression
           supported by MPSS
          Length = 270

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 395 VVPSAAALIIRALKEPPR-DRKKQKNIKHNGNISLXRCNRHCEDHEKQIN 541
           V P     I +  ++PP+ + K+ +N+K N N  +   N   ++  KQ+N
Sbjct: 3   VFPGFGGWINQNNQQPPKGESKRSENVKSNSNTDMDTNNTEDDEEIKQLN 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,544,131
Number of Sequences: 28952
Number of extensions: 312552
Number of successful extensions: 790
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)