Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_D16
(929 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.67
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.67
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.67
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.67
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.67
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.6
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 6.3
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 8.3
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 8.3
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.67
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +1
Query: 751 PXRAXKPXKXPGXRGVFPKGPXPPXXXLPKKFXXPSSXGGETPRGAXXXXPGGXPP 918
P P + PG G+ P P PP P +F P G P PGG PP
Sbjct: 298 PPPPPPPGRTPGPPGM-PGMPPPPP---PSRFGPPGMGGMPPPPPPGMRYPGGMPP 349
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/70 (32%), Positives = 26/70 (37%)
Frame = +2
Query: 719 PPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPXXGPXKX 898
PP T PP P P G +P+ P PP PP G P GP
Sbjct: 264 PPPPPSVTPMPPPMPPTP-------GMTPRPPPPPSSGM-WPPPPPPPPGRTP--GP-PG 312
Query: 899 XPGVXPPXXP 928
PG+ PP P
Sbjct: 313 MPGMPPPPPP 322
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/76 (28%), Positives = 23/76 (30%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P PP PP P P G P PP F PP + G P
Sbjct: 281 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF---GPPGMG-GMPPP 336
Query: 881 XGPXKXXPGVXPPXXP 928
P PG PP P
Sbjct: 337 PPPGMRYPGGMPPPPP 352
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.67
Identities = 24/76 (31%), Positives = 26/76 (34%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P G PP PP G P + GG P P PP P PP GG
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPP----ISGG--PPPPPPPPGGCPPPPPPP-PPGGFKG 782
Query: 881 XGPXKXXPGVXPPXXP 928
P PG+ P P
Sbjct: 783 GPPPPPPPGMFAPMAP 798
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/73 (28%), Positives = 21/73 (28%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P G PP PP P GG P P PP F PP G
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Query: 881 XGPXKXXPGVXPP 919
P P PP
Sbjct: 796 MAP--VIPDYLPP 806
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.67
Identities = 24/76 (31%), Positives = 26/76 (34%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P G PP PP G P + GG P P PP P PP GG
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPP----ISGG--PPPPPPPPGGCPPPPPPP-PPGGFKG 782
Query: 881 XGPXKXXPGVXPPXXP 928
P PG+ P P
Sbjct: 783 GPPPPPPPGMFAPMAP 798
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/73 (28%), Positives = 21/73 (28%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P G PP PP P GG P P PP F PP G
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Query: 881 XGPXKXXPGVXPP 919
P P PP
Sbjct: 796 MAP--VIPDYLPP 806
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.67
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +1
Query: 751 PXRAXKPXKXPGXRGVFPKGPXPPXXXLPKKFXXPSSXGGETPRGAXXXXPGGXPP 918
P P + PG G+ P P PP P +F P G P PGG PP
Sbjct: 308 PPPPPPPGRTPGPPGM-PGMPPPPP---PSRFGPPGMGGMPPPPPPGMRYPGGMPP 359
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/70 (32%), Positives = 26/70 (37%)
Frame = +2
Query: 719 PPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPXXGPXKX 898
PP T PP P P G +P+ P PP PP G P GP
Sbjct: 274 PPPPPSVTPMPPPMPPTP-------GMTPRPPPPPSSGM-WPPPPPPPPGRTP--GP-PG 322
Query: 899 XPGVXPPXXP 928
PG+ PP P
Sbjct: 323 MPGMPPPPPP 332
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/76 (28%), Positives = 23/76 (30%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P PP PP P P G P PP F PP + G P
Sbjct: 291 PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF---GPPGMG-GMPPP 346
Query: 881 XGPXKXXPGVXPPXXP 928
P PG PP P
Sbjct: 347 PPPGMRYPGGMPPPPP 362
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.67
Identities = 24/76 (31%), Positives = 26/76 (34%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P G PP PP G P + GG P P PP P PP GG
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPP----ISGG--PPPPPPPPGGCPPPPPPP-PPGGFKG 365
Query: 881 XGPXKXXPGVXPPXXP 928
P PG+ P P
Sbjct: 366 GPPPPPPPGMFAPMAP 381
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/73 (28%), Positives = 21/73 (28%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P G PP PP P GG P P PP F PP G
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
Query: 881 XGPXKXXPGVXPP 919
P P PP
Sbjct: 379 MAP--VIPDYLPP 389
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKP 877
P G PP + PP +P SP P PP P S P GG P
Sbjct: 266 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAG---SPPPPPPPRGSPPTGSLPPPQAGGSP 321
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/75 (26%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P +G PP + PP +P P PP SPP G P
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP-AGGSPPPPRAGSPPP 299
Query: 881 XGPXKXXP--GVXPP 919
P + P G PP
Sbjct: 300 PPPPRGSPPTGSLPP 314
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKP 877
P G PP + PP +P SP P PP P S P GG P
Sbjct: 287 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAG---SPPPPPPPRGSPPTGSLPPPQAGGSP 342
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/75 (26%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P +G PP + PP +P P PP SPP G P
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP-AGGSPPPPRAGSPPP 320
Query: 881 XGPXKXXP--GVXPP 919
P + P G PP
Sbjct: 321 PPPPRGSPPTGSLPP 335
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKP 877
P G PP + PP +P SP P PP P S P GG P
Sbjct: 272 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAG---SPPPPPPPRGSPPTGSLPPPQAGGSP 327
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/75 (26%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P +G PP + PP +P P PP SPP G P
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP-AGGSPPPPRAGSPPP 305
Query: 881 XGPXKXXP--GVXPP 919
P + P G PP
Sbjct: 306 PPPPRGSPPTGSLPP 320
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 6.3
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Frame = +3
Query: 702 PKXGGXPRKKXXEPXGPXKGPETX--KXAXXAGGFPQRXPXPPXXXSQ------KIXXPX 857
P GG P + P GP +G + + + GGFPQR P SQ + P
Sbjct: 1497 PMRGGPPMFRGGPP-GPGRGMPSPMMRGSSMRGGFPQRGGGPGMGPSQYYHDSPQNRGPP 1555
Query: 858 FXGGGNPXXGLXKXPRGXPP 917
G P G+ G PP
Sbjct: 1556 MGGLPPPHGGMNGWRGGPPP 1575
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.3
Identities = 24/99 (24%), Positives = 28/99 (28%)
Frame = +2
Query: 620 PPHXPXAPGXRXXXXXXXXXXXXXXXFPXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGF 799
PP P APG P G P E + PP P P G
Sbjct: 188 PPGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPPGEAG--PQGPPGSPGQPGADGSPGQP 245
Query: 800 SPKXPXPPXXXFPKNSPPXVXXGGKPXXGPXKXXPGVXP 916
PK P P + P P P + G+ P
Sbjct: 246 GPKGPNGPDGQPGADGNPGAPGPAGPPGSPGER--GICP 282
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.3
Identities = 24/99 (24%), Positives = 28/99 (28%)
Frame = +2
Query: 620 PPHXPXAPGXRXXXXXXXXXXXXXXXFPXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGF 799
PP P APG P G P E + PP P P G
Sbjct: 188 PPGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPPGEAG--PQGPPGSPGQPGADGSPGQP 245
Query: 800 SPKXPXPPXXXFPKNSPPXVXXGGKPXXGPXKXXPGVXP 916
PK P P + P P P + G+ P
Sbjct: 246 GPKGPNGPDGQPGADGNPGAPGPAGPPGSPGER--GICP 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,257,337
Number of Sequences: 27780
Number of extensions: 183302
Number of successful extensions: 444
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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