Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_D16
(929 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 35 0.067
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 33 0.20
At1g10620.1 68414.m01204 protein kinase family protein contains ... 32 0.62
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 30 1.9
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 30 2.5
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 30 2.5
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 29 4.4
At4g22740.2 68417.m03281 glycine-rich protein 29 5.8
At4g22740.1 68417.m03280 glycine-rich protein 29 5.8
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 29 5.8
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 7.7
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 28 7.7
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 28 7.7
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 35.1 bits (77), Expect = 0.067
Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Frame = +2
Query: 719 PPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXX-FPKNSPPXVXXGGKPXXGPXK 895
PP PP P P GG P P P P +SP GG P P
Sbjct: 458 PPSTTPSPGSPPTSPTTP----TPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPTT 513
Query: 896 XXPGVXPP 919
PG PP
Sbjct: 514 PSPGGSPP 521
Score = 33.5 bits (73), Expect = 0.20
Identities = 25/82 (30%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXP---PKGPXNPXXGXVXGGFS--PKXPXP-PXXXFPKNSPPXVX 862
P G PP P P P P G S P P P P SP
Sbjct: 417 PSPGGSPPSPSISPSPPITVPSPPTTPSPGGSPPSPSIVPSPPSTTPSPGSPPTSPTTPT 476
Query: 863 XGGKPXXGPXKXXPGVXPPXXP 928
GG P P PG PP P
Sbjct: 477 PGGSPPSSPTTPTPGGSPPSSP 498
Score = 31.5 bits (68), Expect = 0.82
Identities = 23/76 (30%), Positives = 25/76 (32%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P G PP PP +P SP P P P +SP GG P
Sbjct: 443 PSPGGSPPSPSIVPS-PPSTTPSPGSPPT----SPTTPTPGGS--PPSSPTTPTPGGSPP 495
Query: 881 XGPXKXXPGVXPPXXP 928
P PG PP P
Sbjct: 496 SSPTTPTPGGSPPSSP 511
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/73 (27%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Frame = +2
Query: 713 GXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXX-FPKNSPPXVXXGGKPXXGP 889
G PP T P P + GG P P P P +SP GG P
Sbjct: 466 GSPPTSP-TTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPSPGGSPPSPS 524
Query: 890 XKXXPGVXPPXXP 928
P + P P
Sbjct: 525 ISPSPPITVPSPP 537
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Frame = +2
Query: 710 RGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXP--XPPXXXFPKNSPPXVXXGGKPXX 883
R PP K T+ PP P P +SP P PP + PP V P
Sbjct: 521 RSPPPPKVEDTRVPPPQPPMPSPSPPSPIYSPPPPVHSPPPPVYSSPPPPHVYSPPPPVA 580
Query: 884 GPXKXXP 904
P P
Sbjct: 581 SPPPPSP 587
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 31.9 bits (69), Expect = 0.62
Identities = 19/62 (30%), Positives = 21/62 (33%)
Frame = +2
Query: 719 PPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPXXGPXKX 898
PP + T PP P +P SP P PP P P V KP P
Sbjct: 69 PPNQPPNTTPPPTPPSSPPPSITPPP-SPPQPQPPPQSTPTGDSPVVIPFPKPQLPPPSL 127
Query: 899 XP 904
P
Sbjct: 128 FP 129
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/70 (30%), Positives = 22/70 (31%)
Frame = +2
Query: 719 PPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPXXGPXKX 898
PP PP P P V P P PP +P PP V P
Sbjct: 387 PPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYP-------PPPS 439
Query: 899 XPGVXPPXXP 928
P V PP P
Sbjct: 440 PPYVYPPPPP 449
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/65 (29%), Positives = 19/65 (29%)
Frame = +2
Query: 734 FXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPXXGPXKXXPGVX 913
F T P P P SP P PP P PP P P G
Sbjct: 366 FTTANAPPAPPGPANQT-----SPPPPPPPSAAAPPPPPPPKKGPAAPPPPPPPGKKGAG 420
Query: 914 PPXXP 928
PP P
Sbjct: 421 PPPPP 425
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/68 (26%), Positives = 22/68 (32%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P PP F P + P G F + P PP FP +P G P
Sbjct: 391 PQFPSQPPRPQF----PNQAPNQQSTGRFNPQFPNQRPSPPQSRFPDQAPNQQPSGPSPN 446
Query: 881 XGPXKXXP 904
P + P
Sbjct: 447 RHPDRQGP 454
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/75 (28%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Frame = +2
Query: 710 RGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKN----SPPXVXXGG-K 874
RG P + GP G G P+ PP P PP GG
Sbjct: 115 RGVPTGPLVQAQPGLSGPVRGIGGPAPGMMQPQISRPPQIIRPPGQMPPQPPFAGQGGPP 174
Query: 875 PXXGPXKXXPGVXPP 919
P G PG PP
Sbjct: 175 PPYGMRPPYPGPPPP 189
>At4g22740.2 68417.m03281 glycine-rich protein
Length = 356
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Frame = -3
Query: 918 GGXTP-GXXXXGPXXGFPPXXTXGGEF--FGKXXXGGXGXFGENPPXTXPFXGFXGPXGG 748
GG P G GP GF GG F FG+ GG G P F G P
Sbjct: 5 GGRDPFGGGFGGPFGGF-----GGGSFGGFGRGSFGGFGGPNGPPSLMSNFFGGRDPFDD 59
Query: 747 XLVXKXFSGG 718
+ F GG
Sbjct: 60 PFFTQPFGGG 69
>At4g22740.1 68417.m03280 glycine-rich protein
Length = 356
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Frame = -3
Query: 918 GGXTP-GXXXXGPXXGFPPXXTXGGEF--FGKXXXGGXGXFGENPPXTXPFXGFXGPXGG 748
GG P G GP GF GG F FG+ GG G P F G P
Sbjct: 5 GGRDPFGGGFGGPFGGF-----GGGSFGGFGRGSFGGFGGPNGPPSLMSNFFGGRDPFDD 59
Query: 747 XLVXKXFSGG 718
+ F GG
Sbjct: 60 PFFTQPFGGG 69
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/74 (29%), Positives = 26/74 (35%)
Frame = +2
Query: 698 FPXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKP 877
+P G PP + PP G P G G P PP +P+ PP P
Sbjct: 511 YPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQG--YPAQGYPP-PQYPQGHPPQY-----P 562
Query: 878 XXGPXKXXPGVXPP 919
GP G PP
Sbjct: 563 YQGPPPPHYGQAPP 576
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/76 (23%), Positives = 22/76 (28%)
Frame = +2
Query: 701 PXXRGXPPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPX 880
P PP + + PP +P SP P P P P P
Sbjct: 547 PPQFSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPPPPIYPYLSPPPPPTPVSSPPPTPV 606
Query: 881 XGPXKXXPGVXPPXXP 928
P P + PP P
Sbjct: 607 YSPPPPPPCIEPPPPP 622
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +2
Query: 719 PPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGK-PXXGPXK 895
PP+ PPK P P + K P PP P PP V K P P
Sbjct: 29 PPKPSPAPHKPPKHPVKPPKPP-----AVKPPKPPAVKPPTPKPPTVKPHPKPPTVKPHP 83
Query: 896 XXPGVXPPXXP 928
P V P P
Sbjct: 84 KPPTVKPHPKP 94
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/67 (25%), Positives = 21/67 (31%)
Frame = +2
Query: 719 PPEKXFXTKXPPKGPXNPXXGXVXGGFSPKXPXPPXXXFPKNSPPXVXXGGKPXXGPXKX 898
PP + + PP +P V P P PP + PP V P
Sbjct: 496 PPPYVYSSPPPPYVYSSPPPPYVYSSPPPPPPSPPPPCPESSPPPPVVYYAPVTQSPPPP 555
Query: 899 XPGVXPP 919
P PP
Sbjct: 556 SPVYYPP 562
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,684,311
Number of Sequences: 28952
Number of extensions: 162949
Number of successful extensions: 458
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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