Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D15
         (940 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    26   0.49 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   4.5  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   6.0  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 670 FCWDPPPMRSSIELVLLSWL*TPLGKP 590
           F W   P  + +E+V+L WL   +G P
Sbjct: 103 FSWIASPACTELEVVMLDWLGKMIGLP 129


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 501 GTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPS 602
           G GP    Y   FN P       P     AGFPS
Sbjct: 33  GYGPLRTSYQHHFNSPAGNAHTGPTGTHDAGFPS 66


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 534 APHTAQELVQYPELGVQTSA 475
           AP+ + +   YP +GV++SA
Sbjct: 12  APYPSTDQNPYPSIGVESSA 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,635
Number of Sequences: 336
Number of extensions: 4974
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26375415
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)