Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D15
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    75   1e-14
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    30   0.41 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    29   0.72 
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    29   0.95 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   2.9  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   6.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   8.8  

>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 37/71 (52%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
 Frame = +2

Query: 224 LGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDR--ETQYPVAPQSQVYDYI 397
           +GS+ISLISK+DIRY G L  ++ Q+ T+AL  VR  GTE R  +    + P   V+DYI
Sbjct: 5   IGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDYI 64

Query: 398 LFRGSDIKDIR 430
           +FRGSD+KD+R
Sbjct: 65  VFRGSDVKDLR 75


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 463 ILPLC--RCLYPQLWVLDQLLGSMWGSLTIQLLDKLHILSIIQWLAFQVEFTTSSTRRA 633
           ILPL     + P+  VL+ +LGS  G + + L +KL ++ I+Q +   V    +  RRA
Sbjct: 671 ILPLMLQALVDPEPAVLESVLGSFSGLIELHLFEKLVVVDILQLVLPLVAVPNAYIRRA 729


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 19/48 (39%), Positives = 21/48 (43%)
 Frame = +3

Query: 477 QMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQL 620
           QM     L +   P   +G   HP V QTP P   P    PSG  NQL
Sbjct: 138 QMQSREALLSQQIPPNQIGINAHPAVRQTPQPA--PSPNTPSGNANQL 183


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1010

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 571  LSIIQWLAFQVEFTTSSTRRAQCLTSLVEDPNKMHLGQVHLLSVFIGKVQQLTKAFRLVQ 750
            + I+  LA  + +   +    +C    VEDP K H     LLS+       L      V+
Sbjct: 813  VEIVDRLAAMLNYNLQALCGPKCSNLKVEDPTKYHFNAKTLLSIIFDVYLNLCNEPAFVE 872

Query: 751  ALA 759
            A+A
Sbjct: 873  AVA 875


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
 Frame = +3

Query: 525 YVGQFNHPVVGQTPYPQYH----PMAGFPSGVHNQLNKTSSMLDLIGGGSQQNASRSGTP 692
           YVGQ + PV    P P Y+    P AG P+ +    +     + +  GG   + S     
Sbjct: 111 YVGQSSQPVPSYNPLPSYNTASLPNAGIPAAMPGMPSGYPGTVPIPQGGYNAHYSSPYNN 170

Query: 693 AVGVHRKSPTA 725
              +   +PT+
Sbjct: 171 GYPIGAVNPTS 181


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 542 PSSCWTNSISSVSSNGWLSKWS 607
           P+S   N    V+ NGWL++WS
Sbjct: 349 PNSTVLNEHGYVTYNGWLAQWS 370


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 726 QLLDFSYEHRQQVYLTEMHFVGILHQ*GQALSSSC*AGCELHLESQPLDDTEDMEF 559
           QLL+  ++H Q   L + HF GI    GQ + +      +L+  SQ +++    ++
Sbjct: 332 QLLEVPWQHHQCHPLIKTHFFGIF---GQKIDAIDFYSAKLYKISQQIENARSFDY 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,683,272
Number of Sequences: 5004
Number of extensions: 80120
Number of successful extensions: 224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)