Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D15
         (940 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   2e-19
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.0  
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    29   4.1  
SB_3901| Best HMM Match : PkinA_anch (HMM E-Value=2.4)                 29   4.1  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          29   5.4  
SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.2  

>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 93.9 bits (223), Expect = 2e-19
 Identities = 39/75 (52%), Positives = 59/75 (78%)
 Frame = +2

Query: 203 MSSGMPELGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQSQ 382
           M+S +P +GS I+L+SKA+IRY G L+ +D +E T+ LA+VRSFGTE R+    + P+++
Sbjct: 1   MTSSIPYIGSIINLVSKAEIRYVGTLYAIDTKESTVTLANVRSFGTEGRKVDVEIPPRNE 60

Query: 383 VYDYILFRGSDIKDI 427
           +Y+YI+FRG DIKD+
Sbjct: 61  IYEYIVFRGQDIKDL 75


>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +1

Query: 520 GSMWGSLTIQLLDKLHILSIIQWLAFQVE-FTTSSTRRAQCLTSLVEDPNKMHLGQVHLL 696
           G  W  +    L  LH++S I    F++  F T++  +  CL+++      +++  V L 
Sbjct: 509 GPFWRKIPSTFLYHLHVVSTIDMPPFKMSRFATANENQRVCLSAMAWVTLDLYILTVTLY 568

Query: 697 SVFIGKVQQLTKAFRLV 747
             ++   +Q  K  RLV
Sbjct: 569 KTYVHSNRQGKKMLRLV 585


>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 608 NSTWKASH-WMILRIWSLSNNWMVKLPHILPRSWSSTQSW 492
           ++ W A H W     WS  NNW +        +WS+  +W
Sbjct: 3   HNNWSAYHNWSTYENWSSHNNWSIHNNWSTHNNWSTYNNW 42


>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -3

Query: 605 STWKASHWMILRIWSLSNNWMVKLPHILPRSWSSTQSW 492
           + W  ++W     WS  NNW          +WS+  +W
Sbjct: 51  NNWSHNNWSTYNNWSTYNNWSTYNNWSTYNNWSTYHNW 88



 Score = 28.3 bits (60), Expect = 9.5
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -3

Query: 620 ELVVNSTWKA-SHWMILRIWSLSNNWMVKLPHILPRSWSSTQSW 492
           +L  ++ W   ++W     WS  NNW          +WS+  +W
Sbjct: 297 QLDTHNNWSTHNNWSTYNNWSTHNNWSTYNNWSTHNNWSTYNNW 340


>SB_3901| Best HMM Match : PkinA_anch (HMM E-Value=2.4)
          Length = 239

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 540 NHPVVGQTPYPQYHPMAGFPSGVHNQL 620
           N PV+G +PY +   +  F +G+H QL
Sbjct: 131 NIPVLGDSPYQEVADLTFFGNGIHKQL 157


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +3

Query: 456 PNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSG 605
           P +  +     PP  G  P PG Y G    P  G   YP   P  G+P G
Sbjct: 219 PQNHPLTNYPAPPPQGYAPPPGGYPGA---PPAG--GYPGAPPPGGYPGG 263


>SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 27/104 (25%), Positives = 37/104 (35%)
 Frame = +3

Query: 411 LTSRISGXLNNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMA 590
           LT + +  L      PN P   Q + P    TG  P Q  GQ  +   GQ P        
Sbjct: 65  LTQQANNPLTPKGKQPNQPTDQQPNKP----TGQQPNQPTGQQPNQPTGQQPKDPTGQQP 120

Query: 591 GFPSGVHNQLNKTSSMLDLIGGGSQQNASRSGTPAVGVHRKSPT 722
             P+G   Q N+ +    L     QQ    +G   +    + PT
Sbjct: 121 NDPTG--KQFNQPTGQ-QLTDPTGQQPTDPTGEQIIDPTGQQPT 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,828,777
Number of Sequences: 59808
Number of extensions: 617163
Number of successful extensions: 1569
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2740956230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)