Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D15
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.046
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.43 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   2.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.0  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   7.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.0  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   7.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   9.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   9.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.046
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = +3

Query: 465 PAIMQMSVPPTLGT-GPAPGQYVGQFNHPVVGQTPYPQYHPMAGFPSGVHNQLNKTSSML 641
           P I Q S  P+ G  GP P  +      P  G  P P   P  G P G     N +  M+
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSP-QAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMI 65

Query: 642 DLIGG 656
               G
Sbjct: 66  SPASG 70



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 426 SGXLNNVPSMPNDPAIMQMSVPPTLGTGPAPG 521
           SG     PS    P   Q   PP    GP PG
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPG 49


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 454 CPMILPLCRCLYPQ---LWVLDQLLGSMWGSLTIQLLD 558
           CP+IL  C+C+Y Q   L +  +L G +   + +   D
Sbjct: 176 CPLILGSCKCIYVQSINLCMAGRLFGYLCPGMALSQFD 213


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -2

Query: 753 RLYQPECFGQLLDFSYEHRQQVYLTEMHFVGILHQ*GQALSSS---C*AGCELHLESQPL 583
           R+++P+ +      SY H     +T  +    L+Q G+ L SS     AGC ++LE+ P+
Sbjct: 84  RIWKPDTYFYNGKHSYLHT----ITSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPM 139

Query: 582 D 580
           D
Sbjct: 140 D 140



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -1

Query: 148 TEKLSTE*IRTNNKMTDGKLAT----SAAFTNSQCCRIKIL 38
           T  L  E I  +NK T G LAT    S  FT S+   I+++
Sbjct: 328 TRPLKKEPITQSNKRTAGNLATREHPSRNFTMSEDGMIEVI 368


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 144 KNYPPNKSEQTT 109
           K YPP+++EQ+T
Sbjct: 340 KKYPPSETEQST 351


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 144 KNYPPNKSEQTT 109
           K YPP+++EQ+T
Sbjct: 340 KKYPPSETEQST 351


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 679 GQVHLLSVFIGKVQQLTKAFRLVQALAA 762
           G +HLL     + Q++ +AF+ VQ L +
Sbjct: 145 GALHLLFRHFSQRQEVLQAFKQVQLLVS 172


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 481 CLYPQLW--VLDQLLGSMWGSLTIQLLDKLHI 570
           C   + W  ++  ++G+     T+ LLDK+HI
Sbjct: 303 CFLFRAWESIIVGMIGAFITCFTMPLLDKMHI 334


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 265 LRRPTFYCRSSGMYY 309
           + +PTF C+  G +Y
Sbjct: 227 IEQPTFLCKGDGKWY 241


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 679 GQVHLLSVFIGKVQQLTKAFRLVQALAA 762
           G +HLL     + Q++ +AF+ VQ L +
Sbjct: 113 GALHLLFRHFSQRQEVLQAFKQVQLLVS 140


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 438 NNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAG 593
           N  PS PN P          L +    GQ     N  V    PYP  HP++G
Sbjct: 62  NFSPSGPNSPGSFTAGCHSNLLSTSPSGQ-----NKAVA---PYPPNHPLSG 105


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 438 NNVPSMPNDPAIMQMSVPPTLGTGPAPGQYVGQFNHPVVGQTPYPQYHPMAG 593
           N  PS PN P          L +    GQ     N  V    PYP  HP++G
Sbjct: 62  NFSPSGPNSPGSFTAGCHSNLLSTSPSGQ-----NKAVA---PYPPNHPLSG 105


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 522 QYVGQFNHPVVGQTPYPQYHP 584
           QY G     +VG++ +  YHP
Sbjct: 329 QYFGYLPQDMVGRSLFDFYHP 349


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 522 QYVGQFNHPVVGQTPYPQYHP 584
           QY G     +VG++ +  YHP
Sbjct: 35  QYFGYLPQDMVGRSLFDFYHP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,908
Number of Sequences: 438
Number of extensions: 5845
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)