Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D14
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44050| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.69 
SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)               29   3.7  
SB_48161| Best HMM Match : LSPR (HMM E-Value=8.2)                      29   6.5  
SB_33181| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_44050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 140 WVCFLETLNVTLVKVNQADRVK 75
           W+C   T+NVTL K+N ++R K
Sbjct: 36  WICIERTINVTLPKINSSERKK 57


>SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
          Length = 291

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 680 NWRKRTSQRLMKCRVYISREEYICLQL-KCTFYLNK 784
           N+RKR    L KC  Y  R    C +L KCT+YL +
Sbjct: 190 NYRKRRCPPLTKCNYYRKRR---CPRLTKCTYYLKR 222


>SB_48161| Best HMM Match : LSPR (HMM E-Value=8.2)
          Length = 163

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 140 WVCFLETLNVTLVKVNQADRVKT 72
           W+C   T+NVTL K+N +   K+
Sbjct: 93  WICIERTINVTLPKINSSAHKKS 115


>SB_33181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 140 WVCFLETLNVTLVKVNQADRVKTTLSCI 57
           W+    T+NVTL K+N ++R K + S I
Sbjct: 52  WMYIERTINVTLPKINSSERKKNSSSRI 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,233,881
Number of Sequences: 59808
Number of extensions: 435897
Number of successful extensions: 1732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)