Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_D14
(864 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie... 34 0.15
AF016415-4|AAW88419.1| 298|Caenorhabditis elegans Serpentine re... 30 1.9
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z79757-6|CAB02127.1| 350|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z70213-8|CAA94170.4| 253|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z70213-7|CAH19092.1| 199|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF125954-4|AAD14710.1| 337|Caenorhabditis elegans Seven tm rece... 28 9.9
AF016432-5|AAB65378.1| 347|Caenorhabditis elegans Seven tm rece... 28 9.9
AC006769-5|AAF60577.2| 339|Caenorhabditis elegans Hypothetical ... 28 9.9
>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 1 protein.
Length = 1383
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +3
Query: 429 IIFLLYTCLYLLFNNKHYFA----LWGSLEKSQISSNLL*SCVIFTSIGCCYGCSVVCVF 596
+I L + Y+ F+ YF LW L S+I +L + S C +G + +F
Sbjct: 632 VIALAFLIGYVTFSLGRYFVCENQLWSILVHSRICLGMLSVIINLLSSFCSWG--IFSMF 689
Query: 597 GLHSSYTVANLEFFFVYLYDCCEKYNI 677
G+H ++FF V L C + +
Sbjct: 690 GIHPVKNALVVQFFVVTLLGVCRTFMV 716
>AF016415-4|AAW88419.1| 298|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 31 protein.
Length = 298
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 590 CFWAS*QLY-CC*FGVFFCLSVRLL*KVQHWNWRKRTSQRLMKCRVYISREEYICLQLKC 766
CF++ L+ C F + C+S+ L K+ WN RK++ Q +S+ + L C
Sbjct: 169 CFFSYFMLHRCIVFSINICVSIVLSVKLLFWN-RKQSHQHKNNNNNKLSKANRLALLDTC 227
Query: 767 TFYL 778
T +L
Sbjct: 228 TVFL 231
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
protein ZK1067.2 protein.
Length = 2219
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 662 TTIVQINKKKLQISNSIAAMKPKNTHDTTTIAAANTSKYNAAL 534
+ ++QINKK +S + P ++ +A NT KY +L
Sbjct: 785 SNLIQINKKWYNVSRLLDEFHPDYMDESQRLAFCNTFKYELSL 827
>Z79757-6|CAB02127.1| 350|Caenorhabditis elegans Hypothetical
protein F55B12.6 protein.
Length = 350
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 495 GSLEKSQISSNLL*SCVIFTSIGCCYGCSVVCVFGLHSSYTVANLE 632
G+LE I S+ + + + FT +G + SVVC +G+ S +ANL+
Sbjct: 208 GTLE--MIVSSFIAASIFFTMMGTSF--SVVCYYGVLSYRRIANLQ 249
>Z70213-8|CAA94170.4| 253|Caenorhabditis elegans Hypothetical
protein ZK930.3a protein.
Length = 253
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 659 TIVQINKKKLQISNSIAAMKPKNTHDTTTIAAANTSKYNAALK*IRRYLGFFK 501
TI ++NK+K + S I + + IAAA T K + K ++RY K
Sbjct: 61 TIDELNKEKEEHSEIIQLINQDKSDLEREIAAAETEKKDRESKIVKRYEALLK 113
>Z70213-7|CAH19092.1| 199|Caenorhabditis elegans Hypothetical
protein ZK930.3b protein.
Length = 199
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 659 TIVQINKKKLQISNSIAAMKPKNTHDTTTIAAANTSKYNAALK*IRRYLGFFK 501
TI ++NK+K + S I + + IAAA T K + K ++RY K
Sbjct: 37 TIDELNKEKEEHSEIIQLINQDKSDLEREIAAAETEKKDRESKIVKRYEALLK 89
>AF125954-4|AAD14710.1| 337|Caenorhabditis elegans Seven tm
receptor protein 119 protein.
Length = 337
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 540 CVIFTSIGCCYGCSVVCVFGLHSSYTVANLEFFFV 644
CV+ S CY VC + +YT A L +FF+
Sbjct: 99 CVLLLSTHFCYRYMAVCRPHIVRNYTGARLLYFFI 133
>AF016432-5|AAB65378.1| 347|Caenorhabditis elegans Seven tm
receptor protein 225 protein.
Length = 347
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = -2
Query: 842 YKNIIYLNLHNIHKWALIIIYLSKKCILTVGRCILPVIYKLCIS*VFGLFSSSNSNVVLF 663
+ +YL + K I+++ K +L++G + ++ L I FG+ N ++
Sbjct: 178 FDEYVYLGPYLYEKAVNGNIHVAIKALLSLGIISVTIVSSLIIVLAFGILCYQKINQLVA 237
Query: 662 TTIVQINKKKLQ 627
TT + KLQ
Sbjct: 238 TTAASVKLIKLQ 249
>AC006769-5|AAF60577.2| 339|Caenorhabditis elegans Hypothetical
protein Y45G12C.10 protein.
Length = 339
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 540 CVIFTSIGCCYGCSVVCVFGLHSSYTVANLEFFFV 644
CV+ S CY VC + +YT A L +FF+
Sbjct: 101 CVLLLSTHFCYRYMAVCRPHIVRNYTGARLLYFFI 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,564,172
Number of Sequences: 27780
Number of extensions: 348863
Number of successful extensions: 834
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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