Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D14
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34690.1 68417.m04924 hypothetical protein                          29   4.0  
At1g49610.1 68414.m05562 F-box family protein contains F-box dom...    29   4.0  
At3g47450.2 68416.m05160 expressed protein                             28   7.0  
At3g47450.1 68416.m05159 expressed protein                             28   7.0  

>At4g34690.1 68417.m04924 hypothetical protein 
          Length = 207

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 719 CIS*VFGLFSSSNSNVVLFTTIVQINKKKLQISNSIAAMKPKN 591
           CIS V+GL+++S ++  L    ++INKK + I      M  KN
Sbjct: 133 CISFVWGLWNTSKTDRSLADLWLEINKKSVVIHEFKKEMSAKN 175


>At1g49610.1 68414.m05562 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 354

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 150 DYNFVNASKKKIVIEKVKDGVPLAEIHEMLLLHTLEDWIVIN 275
           DY ++N+S K++ I K+  G P   I E L LH  +  +V++
Sbjct: 137 DYLYINSSVKQLSIAKILSGCP---IIESLTLHFCDQLMVLD 175


>At3g47450.2 68416.m05160 expressed protein
          Length = 561

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 EKSQISSNLL*SCVIFTSIGCCYGC 578
           EK +    ++   V+ TS+ CCYGC
Sbjct: 87  EKKKKKEEIIARKVVDTSVSCCYGC 111


>At3g47450.1 68416.m05159 expressed protein
          Length = 561

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 504 EKSQISSNLL*SCVIFTSIGCCYGC 578
           EK +    ++   V+ TS+ CCYGC
Sbjct: 87  EKKKKKEEIIARKVVDTSVSCCYGC 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,104,121
Number of Sequences: 28952
Number of extensions: 304883
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)