Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D13
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.13c |||mitochondrial inner membrane peptidase complex ca...    82   1e-16
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    50   3e-07
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    28   2.1  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    28   2.1  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   4.9  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   8.5  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   8.5  

>SPBC336.13c |||mitochondrial inner membrane peptidase complex
           catalytic subunit 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 43/109 (39%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
 Frame = +1

Query: 172 LPIGVTILDTVGYVARVEGISMQPVLNPES--MNTDYVFLSRWAVRDYHVKRGDVISLMS 345
           +P+ + +   V  V  +EG SM+P  NPE+  +  D V L +W  +DY  KRGDV+ L S
Sbjct: 26  VPVLMFVEQHVVSVGTIEGRSMKPAFNPETNMLQRDRVLLWKWN-KDY--KRGDVVILRS 82

Query: 346 PKDPNQKIIKRVVALQGDVVSTLGYKN-QYVKIPEGHCWVEGDHTGHTL 489
           P++P + ++KRV+ ++ D++ T   K    V +PEGH WVEGD   H++
Sbjct: 83  PENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEGDEQFHSI 131



 Score = 34.3 bits (75), Expect = 0.024
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +2

Query: 494 SNTFGPVSLGLVNARAVCIVWPPSR 568
           SN FGPVS GL+ A+ + I++P SR
Sbjct: 133 SNKFGPVSTGLITAKVIAILFPFSR 157


>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = +1

Query: 211 VARVEGISMQPVLNPESMNTDYVFLSRWAVRDYH-VKRGDVISLMSPKDPNQKIIKRVVA 387
           V    G SM P LN      ++V L +   R       GDV+    P D  Q + KR++ 
Sbjct: 28  VQMTSGPSMMPTLNSGG---EFVLLDKLHGRFARSCSVGDVVVSAKPSDSKQHVCKRIIG 84

Query: 388 LQGDVVST-LGYKNQYVKIPEGHCWVEGDHTGHTLXQQH 501
           + GD +       N+ + IP GH W+ GD+  H+L  ++
Sbjct: 85  MPGDTIYVDPTSSNKKITIPLGHVWLAGDNIAHSLDSRN 123



 Score = 35.5 bits (78), Expect = 0.011
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 494 SNTFGPVSLGLVNARAVCIVWPPSRWQS 577
           S  +GPV +GL+ A+ +  VWP   W S
Sbjct: 121 SRNYGPVPMGLIKAKVIARVWPHPHWMS 148


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 256 ESMNTDYVFLSRWAVRDYHVKRGDVISLMSPKD 354
           E    DY F+SR    +  +K+GD+I+++S  D
Sbjct: 225 EFCKADYEFMSRDPGVEMSLKKGDIIAILSKTD 257


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 558 GQTMHTALALTKPNETGPKVLLXEGVTCVIT 466
           G+T+   + +T+ NE  P+ +  EG  CV+T
Sbjct: 344 GKTVKKLMLVTEDNEAVPEKIGCEGFVCVVT 374


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 804 SNKXKVKSNMRLVRDQENKYIDXMQIQKMFLLPF 703
           SN     S   +  DQ++K +    I+K FL+PF
Sbjct: 262 SNIKSAISEGYIAHDQQSKKVSVQNIKKEFLIPF 295


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 90  INTDMLLEIKWRPTHVA*KCMQVSCLRLTNRCNHSRHGRLCG*S*RNFHA 239
           +   ++++  W+P      C    C +L N  N   H R CG    NFH+
Sbjct: 121 LTDSLVVKNHWQPEVPDMVCHDPMCDKLLNFINGHIHCRKCGYIFCNFHS 170


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 214 ARVEGISMQPVLNPESMNTDYVFLSRWAVRDYHVKRGDVISLMSPKDPNQKIIKRVVALQ 393
           A   GIS + V  PE +    + L+     +     G ++ L  P   N++II   VA +
Sbjct: 58  ANEAGISCEHVNFPEDITEYDLLLAIKGFNEDPTVHGIIVQLPLPAHINEQIITEAVAPE 117

Query: 394 GDV 402
            DV
Sbjct: 118 KDV 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,431
Number of Sequences: 5004
Number of extensions: 72365
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)