Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_D13
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0338 + 4424928-4425072,4425158-4425233,4425350-4425515,442... 73 3e-13
11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537 59 4e-09
03_01_0337 + 2664648-2664670,2664752-2664838,2664930-2665095,266... 59 6e-09
04_01_0008 - 173220-173301,173398-173504,173813-173996,176113-17... 35 0.10
02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537 30 2.2
11_01_0771 + 6453130-6454488 29 5.1
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530... 28 9.0
>04_01_0338 +
4424928-4425072,4425158-4425233,4425350-4425515,
4425669-4425791
Length = 169
Score = 72.9 bits (171), Expect = 3e-13
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Frame = +1
Query: 139 LKSVCKSLVFGLPIGVTILDTVGYVARVEGISMQPVLNPESMNTDYVFLSRWAV-RDYHV 315
L+S ++ V G + VT+ D V V G SM P L ES D +SR + Y +
Sbjct: 8 LRSFLRNCVAGTLVVVTVNDRYASVITVRGTSMNPTL--ESQQGDRALVSRLCLDARYGL 65
Query: 316 KRGDVISLMSPKDPNQKIIKRVVALQGDVVSTLGYKNQYVKIPEGHCWVEGDH 474
RGDV+ SP + ++KR++AL GD + + + +IP GHCWVEGD+
Sbjct: 66 SRGDVVVFRSPTEHRSLLVKRLIALPGDWIQ-VPAAQEIRQIPVGHCWVEGDN 117
>11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537
Length = 208
Score = 59.3 bits (137), Expect = 4e-09
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Frame = +1
Query: 214 ARVEGISMQPVLNPESMNTDYVFLSRWAVRDYHVKRGDVISLMSPKDPNQKIIKRVVALQ 393
A+V G SM P +N + D V + + R V GD + L+SP++P + ++KRVV ++
Sbjct: 79 AQVMGPSMLPAMN---LAGDVVAVDLVSARLGRVASGDAVLLVSPENPRKAVVKRVVGME 135
Query: 394 GDVVSTL-----GYKNQYVKIPEGHCWVEGDH 474
GD V+ L ++ V +P+GH WV+GD+
Sbjct: 136 GDAVTFLVDPGNSDASKTVVVPKGHVWVQGDN 167
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 494 SNTFGPVSLGLVNARAVCIVWP 559
S FGPV GL+ + C VWP
Sbjct: 174 SRQFGPVPYGLITGKIFCRVWP 195
>03_01_0337 +
2664648-2664670,2664752-2664838,2664930-2665095,
2665817-2665891,2666931-2667038
Length = 152
Score = 58.8 bits (136), Expect = 6e-09
Identities = 26/66 (39%), Positives = 38/66 (57%)
Frame = +1
Query: 277 VFLSRWAVRDYHVKRGDVISLMSPKDPNQKIIKRVVALQGDVVSTLGYKNQYVKIPEGHC 456
V R ++ Y GDV+ P D + +KR++AL G+ + G + +KIPEGHC
Sbjct: 16 VLAERSCLQKYQFSHGDVVLFKCPSDHRELFVKRLIALPGEWMQLPGTPD-IIKIPEGHC 74
Query: 457 WVEGDH 474
WVEGD+
Sbjct: 75 WVEGDN 80
Score = 39.9 bits (89), Expect = 0.003
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 488 SXSNTFGP--VSLGLVNARAVCIVWPPSRWQSLQAKLPENR 604
S S GP + LGL+ R ++WPPS+ + K+PENR
Sbjct: 108 SASGMIGPPRIPLGLIKGRVAHVIWPPSKIGRVDTKMPENR 148
>04_01_0008 -
173220-173301,173398-173504,173813-173996,176113-176288,
176612-176683
Length = 206
Score = 34.7 bits (76), Expect = 0.10
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 322 GDVISLMSPKDPNQKIIKRVVALQGDVVSTLGYKNQYVKIPEGHCWVEGDH 474
GDV+ L P+ + I++R+ AL+G + + K++ + + CWV D+
Sbjct: 88 GDVVLLKDPEKSDDLIVRRLAALEGYEMVSNDEKDEPFVLDKDQCWVLADN 138
>02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537
Length = 900
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 494 SNTFGPVSLGLVNARAVCI---VWPPSRWQSLQAKLPEN 601
S F + + L R + + VW S W ++Q+KLPEN
Sbjct: 266 STLFQKLEVSLTGMRYLIVIDDVWSTSAWNAIQSKLPEN 304
>11_01_0771 + 6453130-6454488
Length = 452
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 558 GQTMHTALALTKPNETGPKVLLXEGVTC 475
G+T TALA P GP+V+ GV C
Sbjct: 82 GRTAETALADRGPESLGPRVVFAPGVWC 109
>01_01_0690 -
5306754-5307047,5307107-5307279,5308223-5308370,
5309110-5309356,5309694-5309839,5312482-5312707,
5313652-5313874,5314054-5314202,5315345-5315514,
5316064-5316135,5317610-5317741,5317813-5317900,
5319440-5319656,5320123-5320306,5320644-5320727,
5321148-5321242,5321519-5321562,5321707-5322367,
5323053-5323356
Length = 1218
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 469 HLLPNNVLLEFSHTGSCSPMCLQRHL 392
H LPN+V+++ G P LQRH+
Sbjct: 208 HALPNDVMMQVGSPGHRMPSGLQRHM 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,329,818
Number of Sequences: 37544
Number of extensions: 451660
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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