Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D13
         (911 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59710| Best HMM Match : Peptidase_S24 (HMM E-Value=0.7)            109   3e-24
SB_1737| Best HMM Match : UPF0147 (HMM E-Value=6)                      64   2e-10
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)                   28   9.1  
SB_5068| Best HMM Match : DED (HMM E-Value=1.5e-17)                    28   9.1  

>SB_59710| Best HMM Match : Peptidase_S24 (HMM E-Value=0.7)
          Length = 230

 Score =  109 bits (262), Expect = 3e-24
 Identities = 44/85 (51%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
 Frame = +1

Query: 238 QPVLNPESMNTDYVFLSRWAVRDYH-VKRGDVISLMSPKDPNQKIIKRVVALQGDVVSTL 414
           QP  N +    D V L++W V+++  +KRGDV+S++ P DP+  +IKR+VALQGD V  +
Sbjct: 53  QPSFNTDYKTRDIVVLNKWCVKNFKGIKRGDVVSIVDPHDPDIMLIKRIVALQGDHVKAI 112

Query: 415 GYKNQYVKIPEGHCWVEGDHTGHTL 489
           GYKN+YVKIP GHCW+EGD++ H++
Sbjct: 113 GYKNRYVKIPRGHCWIEGDNSNHSM 137



 Score = 50.0 bits (114), Expect = 3e-06
 Identities = 20/41 (48%), Positives = 30/41 (73%)
 Frame = +2

Query: 494 SNTFGPVSLGLVNARAVCIVWPPSRWQSLQAKLPENRQPVS 616
           SNTFGPV +GL+ A+A  +VWP  RW  ++ KL ++R P++
Sbjct: 139 SNTFGPVPVGLIQAKATHVVWPYRRWGRVENKLLKHRAPLN 179


>SB_1737| Best HMM Match : UPF0147 (HMM E-Value=6)
          Length = 253

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
 Frame = +1

Query: 241 PVLNPESMNTDYVFLSRWAVRDYH-VKRGDVISLMSPKDPNQKIIKRVVALQGDVVSTLG 417
           P  NP+    D V L++W V+++  +KRGDV+S+++                      +G
Sbjct: 99  PSFNPDYKTRDIVVLNKWCVKNFKGIKRGDVVSIVA----------------------IG 136

Query: 418 YKNQYVKIPEGHCWVEGDHTGHTL 489
           YKN+YVKIP GHCW+EGD++ H++
Sbjct: 137 YKNKYVKIPRGHCWIEGDNSNHSM 160



 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 20/41 (48%), Positives = 30/41 (73%)
 Frame = +2

Query: 494 SNTFGPVSLGLVNARAVCIVWPPSRWQSLQAKLPENRQPVS 616
           SNTFGPV +GL+ A+A  +VWP  RW  ++ KL ++R P++
Sbjct: 162 SNTFGPVPVGLIQAKATHVVWPYWRWGRVENKLLKHRAPLN 202


>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 1333

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 392 CKATTRLIIFWLGSLGDISEMTS 324
           CKA  R II+W G   DI+E  S
Sbjct: 746 CKARARAIIYWPGMSRDINEKVS 768


>SB_5068| Best HMM Match : DED (HMM E-Value=1.5e-17)
          Length = 786

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 429 LVLVAQCAYNVTL*SYHSFDNLLVRIFGGHQ*NDISSFHVI 307
           +VLVA+C YN  L ++     +  ++ G HQ   + S H I
Sbjct: 706 VVLVARCRYNEALAAFREALRIQEKVLGAHQ-ETVRSHHEI 745


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,038,229
Number of Sequences: 59808
Number of extensions: 546703
Number of successful extensions: 984
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)