Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D13
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical ...    69   4e-12
Z81475-6|CAB03913.2|  132|Caenorhabditis elegans Hypothetical pr...    51   1e-06

>AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.8 protein.
          Length = 152

 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
 Frame = +1

Query: 169 GLPIGVTILDTVGYVARVEGISMQPVL---NPESMNTDYVFLSRWAVRDYHVKRGDVISL 339
           G  +  T  D VG+ A+V G SMQP L   +      D V+LS W +  Y    G +++ 
Sbjct: 13  GTCVVFTFFDVVGHPAQVVGNSMQPTLQGGDARWYKRDIVWLSTWNL--YKCSPGTILTF 70

Query: 340 MSPKDPNQKIIKRVVALQGDVVSTLGYKNQYVKIPEGHCWVEGDHTGH 483
           +SP+DP+   IKRV A++  +V           IP+GH W+EGD+  H
Sbjct: 71  VSPRDPDAVHIKRVTAVENAIVRPEKRPELITDIPKGHYWMEGDNPEH 118



 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +2

Query: 494 SNTFGPVSLGLVNARAVCIVWPPSRWQSL 580
           SN +GPVS  LV  RA  I+WPP+RWQ L
Sbjct: 122 SNVYGPVSTSLVKGRATHIIWPPNRWQRL 150


>Z81475-6|CAB03913.2|  132|Caenorhabditis elegans Hypothetical
           protein C24H11.6 protein.
          Length = 132

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 23/87 (26%), Positives = 51/87 (58%)
 Frame = +1

Query: 241 PVLNPESMNTDYVFLSRWAVRDYHVKRGDVISLMSPKDPNQKIIKRVVALQGDVVSTLGY 420
           P ++P   + D V   R+++R+ +V+ GD++  ++P+ P + + KR+ A +GD V++  +
Sbjct: 7   PSMHPTIHDGDLVLAERFSIRNKNVQVGDIVGCVNPQKPKELLCKRIAAKEGDPVTS--H 64

Query: 421 KNQYVKIPEGHCWVEGDHTGHTLXQQH 501
                ++P GH ++ GD+   +   +H
Sbjct: 65  LLPSGRVPIGHVFLRGDNGPVSTDSRH 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,758,724
Number of Sequences: 27780
Number of extensions: 407125
Number of successful extensions: 788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)