Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D12
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    31   0.011
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   0.95 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   1.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.9  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 31.5 bits (68), Expect = 0.011
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +3

Query: 813 LEGLDYLHTKCKIIHTDIKPENVL 884
           +E  DYLH++  II+ D+KPEN+L
Sbjct: 476 VEAFDYLHSR-NIIYRDLKPENLL 498


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 813 LEGLDYLHTKCKIIHTDIKPENVL 884
           LE + + H    ++H D+KPEN+L
Sbjct: 19  LESVHHCHHN-GVVHRDLKPENLL 41


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 822 LDYLHTKCKIIHTDIKPENVL 884
           L + H    I+H D+KP+N+L
Sbjct: 168 LQFCHN-AGIVHADVKPKNIL 187


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 303 VLVTQTVSLANSPVFFLAIFLFTNFVSFFLR 211
           ++V  + S A    + + IFL   F+SFF R
Sbjct: 558 IIVDSSTSGATIVNYSIMIFLSAVFISFFQR 588


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +1

Query: 346 IEEDEDEQYTSDDEEQEDSAD 408
           ++ED+D+    DD++  ++A+
Sbjct: 389 VDEDDDDDGDDDDDDDVEAAN 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,939
Number of Sequences: 438
Number of extensions: 4468
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)