Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D11
         (965 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    62   2e-08
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    51   5e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    49   2e-04
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    44   0.004
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    38   0.38 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.38 

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 62.5 bits (145), Expect = 2e-08
 Identities = 37/64 (57%), Positives = 38/64 (59%)
 Frame = -2

Query: 640 LVRGXEPREKRQXRGLXXVXWPFGGLVLTCSFPXYPXIXGITVSPPLSEXXPLAAXERPS 461
           LVRG EP EKR    L  V       +LTCSF  YP I  ITV PPLSE  PLAA ERPS
Sbjct: 2   LVRGAEPMEKRLRCWLLPVLC----FLLTCSFRLYPLILWITVLPPLSELTPLAAVERPS 57

Query: 460 AXSQ 449
             SQ
Sbjct: 58  VASQ 61


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 50.8 bits (116), Expect = 5e-05
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +3

Query: 369 VXSALMNRPXXGERRFAYWALFRXLAH 449
           V +ALMNRP  GERRFAYWALFR LAH
Sbjct: 23  VPAALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 49.2 bits (112), Expect = 2e-04
 Identities = 38/100 (38%), Positives = 43/100 (43%)
 Frame = +2

Query: 401 RGEAVCVLGALPLPRSLTXCARSFXCGERXXLTQXXGYGYPXNXGIXRERTCEHKATKRP 580
           R   +C  G +PLPRSLT  ARSF CGER  LT   G        +   R    K   RP
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTDGDG------NFLEDTRKTLSKEEIRP 79

Query: 581 XNXXKAXXLAFFPRLXPPDESSQKSPLKFXGGETXQDYXD 700
                +   A       P  S  KS  +  GGET QDY D
Sbjct: 80  RRSRFSIGSA-------PLTSIAKSDAQISGGETRQDYKD 112


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 22/35 (62%), Positives = 23/35 (65%)
 Frame = +2

Query: 377 CINESAXARGEAVCVLGALPLPRSLTXCARSFXCG 481
           CI + A AR EAV VL ALPL RS T C RS  CG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 37.9 bits (84), Expect = 0.38
 Identities = 22/42 (52%), Positives = 22/42 (52%)
 Frame = +1

Query: 430 SSAXSLTDXXXXXXXXXXAXSXHSXXGIRLSPXSGDXXGKNM 555
           SSA SLTD          A S HS   IRLS  SGD  GKNM
Sbjct: 18  SSASSLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.9 bits (84), Expect = 0.38
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -3

Query: 447 ERGSGRAPNTQTASPRAXADSLMQ 376
           +R +  APNTQTASPRA ADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 424,539,239
Number of Sequences: 1657284
Number of extensions: 4730327
Number of successful extensions: 5997
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5996
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 89815291940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)