Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D10
         (895 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               78   1e-14
SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.7  
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                 28   8.9  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
 Frame = +2

Query: 524 PFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDI 700
           PF  N  PLRRIPQ YVI TST I + + KLP+H F D+ +                +D+
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESY-----FKGEPKKKKRSEDM 56

Query: 701 FATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGXLKAGFGLXSXQYPH 865
           F    E+  PSEQR  DQK VD+ ++  I A P+   ++  L + F L   Q+PH
Sbjct: 57  FEEAAEEKKPSEQRIADQKAVDDQILPKISAVPN---MKKYLSSLFSLRKGQFPH 108


>SB_47767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 545 PLRRIPQRYVICTSTR 592
           PLRR P RY IC  TR
Sbjct: 29  PLRRTPDRYAICDDTR 44


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 307 NQNSTPQ---T*EVLLPHSGENPCLIWWPSIQQACTQDPTQP 423
           NQ++ PQ   T  VL+PH G  PC+  +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 545 PLRRIPQRYVICTSTR 592
           PLRR P RY IC  TR
Sbjct: 33  PLRRTPDRYAICDDTR 48



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 545 PLRRIPQRYVICTSTR 592
           PLRR P RY IC  TR
Sbjct: 106 PLRRTPDRYAICDDTR 121


>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 407

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 719 KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGXLKAG 835
           + VP E+ + + K ++E VIK I A+ +  V R  L+ G
Sbjct: 303 RLVPKERLEREPKVMEEPVIKEIAAKHNCSVARVLLRWG 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,310,156
Number of Sequences: 59808
Number of extensions: 557629
Number of successful extensions: 1483
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)