Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D10
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...   121   7e-28
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...   121   7e-28
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...   120   1e-27
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   2.4  
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN...    29   4.2  
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    29   5.5  
At2g27270.1 68415.m03277 expressed protein                             28   7.3  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score =  121 bits (291), Expect = 7e-28
 Identities = 87/240 (36%), Positives = 120/240 (50%)
 Frame = +2

Query: 146 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 325
           RN DL  GV ++S+S+M+HK+  +                + V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58

Query: 326 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 505
           ++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 506 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXX 685
           LLLVTGPF  N  PLRR+ Q YVI TST++ +    L K F+D YF              
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKKKT 172

Query: 686 EGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGXLKAGFGLXSXQYPH 865
           EG+   A K+EK    + +K DQK VD A+IKAI A P+ K   G   A F L     PH
Sbjct: 173 EGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLG---ARFSLKQGMKPH 229


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score =  121 bits (291), Expect = 7e-28
 Identities = 87/240 (36%), Positives = 120/240 (50%)
 Frame = +2

Query: 146 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 325
           RN DL  GV ++S+S+M+HK+  +                + V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58

Query: 326 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 505
           ++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 506 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXX 685
           LLLVTGPF  N  PLRR+ Q YVI TST++ +    L K F+D YF              
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKKKT 172

Query: 686 EGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGXLKAGFGLXSXQYPH 865
           EG+   A K+EK    + +K DQK VD A+IKAI A P+ K   G   A F L     PH
Sbjct: 173 EGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLG---ARFSLKQGMKPH 229


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score =  120 bits (289), Expect = 1e-27
 Identities = 87/240 (36%), Positives = 120/240 (50%)
 Frame = +2

Query: 146 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 325
           RN DL  GV ++S+S+M+HK+  +                  V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------DAPV 58

Query: 326 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 505
           ++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116

Query: 506 LLLVTGPFAFNSCPLRRIPQRYVICTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXX 685
           LLLVTGPF  N  PLRR+ Q YVI TST+I +      K F+D YF              
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF---GKVAEKKKKKT 172

Query: 686 EGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGXLKAGFGLXSXQYPH 865
           EG+   A K+EK    +++K DQKTVD A+IK+I A P+ KV  G   A F L     PH
Sbjct: 173 EGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLG---ARFSLSQGMKPH 229


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 320 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 409
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
            topoisomerase II / DNA gyrase (TOP2) identical to
            SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
            thaliana}
          Length = 1473

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 704  ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKV 811
            ATK  K  P+  RK  ++TV    + AIG  P+KKV
Sbjct: 1354 ATKAAK-PPAAPRKRGKQTVASTEVLAIGVSPEKKV 1388


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 286 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWPS 387
           W+  E   Q ++PQ   V  L  H G+  C++WWPS
Sbjct: 96  WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 347 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 526
           PT++K  A   G   SKH R +  +    + C+       GK ++  G+  + +LL+   
Sbjct: 21  PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73

Query: 527 FAFNSCPLR-RIPQ 565
           FAFN   ++ R+P+
Sbjct: 74  FAFNYIAIQPRVPR 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,498,410
Number of Sequences: 28952
Number of extensions: 389334
Number of successful extensions: 972
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)