Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_D08
(876 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 236 2e-62
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 236 2e-62
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 155 5e-38
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 155 5e-38
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 153 2e-37
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 153 2e-37
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 153 2e-37
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 152 3e-37
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 152 3e-37
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 152 3e-37
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 152 3e-37
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 152 3e-37
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 152 3e-37
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 152 3e-37
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 152 3e-37
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 152 3e-37
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 152 3e-37
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 152 3e-37
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 152 3e-37
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 152 3e-37
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 151 6e-37
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 151 8e-37
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 138 3e-33
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 117 9e-27
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 95 4e-20
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 69 3e-12
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 69 3e-12
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 64 1e-10
At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase fa... 58 8e-09
At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase fa... 58 8e-09
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 54 9e-08
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 53 2e-07
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 51 9e-07
At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquiti... 51 1e-06
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 51 1e-06
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 51 1e-06
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 50 3e-06
At1g64470.1 68414.m07309 ubiquitin family protein contains INTER... 49 4e-06
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 49 5e-06
At3g06455.1 68416.m00747 splicing factor-related contains weak s... 49 5e-06
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 48 8e-06
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER... 47 1e-05
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 47 1e-05
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 47 1e-05
At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase fa... 46 3e-05
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 46 3e-05
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 46 3e-05
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 46 3e-05
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 46 3e-05
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 46 3e-05
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 46 3e-05
At4g05230.1 68417.m00789 ubiquitin family protein contains INTER... 44 1e-04
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER... 40 0.002
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 40 0.002
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER... 40 0.002
At1g53980.1 68414.m06149 polyubiquitin-related contains similari... 40 0.002
At4g05250.1 68417.m00793 ubiquitin family protein contains INTER... 39 0.005
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER... 37 0.015
At4g05270.1 68417.m00797 ubiquitin family protein contains INTER... 37 0.015
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 37 0.015
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER... 36 0.027
At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase fa... 35 0.062
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 34 0.11
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 33 0.25
At4g14940.1 68417.m02294 copper amine oxidase, putative highly s... 31 0.76
At1g22050.1 68414.m02758 ubiquitin family protein contains INTER... 30 1.8
At1g47680.1 68414.m05297 hypothetical protein 29 5.4
At4g38340.1 68417.m05420 RWP-RK domain-containing protein simila... 28 9.4
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 236 bits (577), Expect = 2e-62
Identities = 110/123 (89%), Positives = 116/123 (94%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 450
IQKESTLHLVLRLRGG IEPSL +LA KYN +KMICRKCYARLHPRA NCRK KCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
Query: 451 LRP 459
LRP
Sbjct: 121 LRP 123
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 236 bits (577), Expect = 2e-62
Identities = 110/123 (89%), Positives = 116/123 (94%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 450
IQKESTLHLVLRLRGG IEPSL +LA KYN +KMICRKCYARLHPRA NCRK KCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
Query: 451 LRP 459
LRP
Sbjct: 121 LRP 123
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 155 bits (375), Expect = 5e-38
Identities = 74/78 (94%), Positives = 78/78 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGGTI 324
IQKESTLHLVLRLRGGT+
Sbjct: 61 IQKESTLHLVLRLRGGTM 78
Score = 100 bits (239), Expect = 1e-21
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +1
Query: 79 RSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 258
R TM I VKTLTGK I +++E +DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T
Sbjct: 74 RGGTM-IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTA 132
Query: 259 SDYNIQKESTLHLVLRLRGGTI 324
DY I+ S LHLVL LRGG +
Sbjct: 133 KDYAIEGGSVLHLVLALRGGLL 154
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 155 bits (375), Expect = 5e-38
Identities = 74/78 (94%), Positives = 78/78 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGGTI 324
IQKESTLHLVLRLRGGT+
Sbjct: 61 IQKESTLHLVLRLRGGTM 78
Score = 103 bits (246), Expect = 2e-22
Identities = 49/80 (61%), Positives = 62/80 (77%)
Frame = +1
Query: 79 RSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 258
R TM I VKTLTGK I +++E +DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T
Sbjct: 74 RGGTM-IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTA 132
Query: 259 SDYNIQKESTLHLVLRLRGG 318
DYNI+ S LHLVL LRGG
Sbjct: 133 KDYNIEGGSVLHLVLALRGG 152
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 153 bits (370), Expect = 2e-37
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 271 IQKESTLHLVLRLRGGT 321
IQKESTLHLVLRLRGG+
Sbjct: 365 IQKESTLHLVLRLRGGS 381
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 153 bits (370), Expect = 2e-37
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 271 IQKESTLHLVLRLRGGT 321
IQKESTLHLVLRLRGG+
Sbjct: 289 IQKESTLHLVLRLRGGS 305
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 153 bits (370), Expect = 2e-37
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 271 IQKESTLHLVLRLRGGT 321
IQKESTLHLVLRLRGG+
Sbjct: 289 IQKESTLHLVLRLRGGS 305
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE 192
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 262
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 194 VFLQTNNVSSLPGNN*KMAALFQTITSRKNPHFTW 298
VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 263 VFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 297
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE 192
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 194 VFLQTNNVSSLPGNN*KMAALFQTITSRKNPHFTW 298
VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 415 VFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 449
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE 192
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 194 VFLQTNNVSSLPGNN*KMAALFQTITSRKNPHFTW 298
VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 339 VFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 373
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE 192
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 194 VFLQTNNVSSLPGNN*KMAALFQTITSRKNPHFTW 298
VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 415 VFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 449
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE 192
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 194 VFLQTNNVSSLPGNN*KMAALFQTITSRKNPHFTW 298
VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 339 VFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 373
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (361), Expect = 2e-36
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 152 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQLEDGRTLADYN 211
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 212 IQKESTLHLVLRLRGG 227
Score = 145 bits (351), Expect = 4e-35
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D N
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD-N 135
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 136 IQKESTLHLVLRLRGG 151
Score = 101 bits (243), Expect = 5e-22
Identities = 49/53 (92%), Positives = 51/53 (96%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 249
MQIFVKTLTGKTITLEVE+S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLE G
Sbjct: 228 MQIFVKTLTGKTITLEVESSGTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEGG 280
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 152 bits (369), Expect = 3e-37
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 151 bits (366), Expect = 6e-37
Identities = 72/76 (94%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 146 bits (355), Expect = 1e-35
Identities = 71/77 (92%), Positives = 75/77 (97%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGI PDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQHEDGRTLADYN 212
Query: 271 IQKESTLHLVLRLRGGT 321
IQKESTLHLVLRLRGG+
Sbjct: 213 IQKESTLHLVLRLRGGS 229
Score = 135 bits (326), Expect = 4e-32
Identities = 63/76 (82%), Positives = 71/76 (93%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIF+KTLTGKT LEVE+SDTI+NVKAKIQD EGIPPDQ RLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFLKTLTGKTKVLEVESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYN 60
Query: 271 IQKESTLHLVLRLRGG 318
+Q++STLHL+LR RGG
Sbjct: 61 VQEDSTLHLLLRFRGG 76
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 151 bits (365), Expect = 8e-37
Identities = 71/76 (93%), Positives = 76/76 (100%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEG+PPDQQRLIFAGKQL+DGRTL+DYN
Sbjct: 79 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYN 138
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRLRGG
Sbjct: 139 IQKESTLHLVLRLRGG 154
Score = 140 bits (340), Expect = 8e-34
Identities = 68/76 (89%), Positives = 72/76 (94%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFV+TLT KTI LEVE+SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 155 MQIFVRTLTRKTIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRL GG
Sbjct: 215 IQKESTLHLVLRLCGG 230
Score = 135 bits (326), Expect = 4e-32
Identities = 68/77 (88%), Positives = 72/77 (93%), Gaps = 1/77 (1%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 267
MQIFV TLTGKTITLEVE+SDTI+NVKAKIQDKE I PDQQRLIFAG+QLEDG TL+DY
Sbjct: 231 MQIFVNTLTGKTITLEVESSDTIDNVKAKIQDKERIQPDQQRLIFAGEQLEDGYYTLADY 290
Query: 268 NIQKESTLHLVLRLRGG 318
NIQKESTLHLVLRLRGG
Sbjct: 291 NIQKESTLHLVLRLRGG 307
Score = 120 bits (288), Expect = 2e-27
Identities = 58/77 (75%), Positives = 67/77 (87%)
Frame = +1
Query: 88 TMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 267
+MQI KTLT KTIT++V +SDTI NVKAKIQD EGIP DQQRLIF+GK L+DGRTL+DY
Sbjct: 2 SMQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLADY 61
Query: 268 NIQKESTLHLVLRLRGG 318
+IQK+S LHL LRLRGG
Sbjct: 62 SIQKDSILHLALRLRGG 78
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 138 bits (335), Expect = 3e-33
Identities = 68/76 (89%), Positives = 73/76 (96%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFV+TLTGKTITLEV++SDTI+NVKAKIQDKEGI P QQRLIFAGKQLEDGRTL+DYN
Sbjct: 79 MQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTLADYN 138
Query: 271 IQKESTLHLVLRLRGG 318
IQKESTLHLVLRL GG
Sbjct: 139 IQKESTLHLVLRLCGG 154
Score = 134 bits (323), Expect = 1e-31
Identities = 65/77 (84%), Positives = 71/77 (92%)
Frame = +1
Query: 88 TMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 267
T+QI+ KTLT KTITL+VE SD+I NVKAKIQ+KEGIP DQQRLIFAGKQLEDG TL+DY
Sbjct: 2 TIQIYAKTLTEKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADY 61
Query: 268 NIQKESTLHLVLRLRGG 318
NIQKESTLHLVLRLRGG
Sbjct: 62 NIQKESTLHLVLRLRGG 78
Score = 117 bits (282), Expect = 9e-27
Identities = 59/81 (72%), Positives = 67/81 (82%)
Frame = +1
Query: 70 VFHRSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 249
+F + MQIF+KTLTGKTI LEVE+SDTI NVK KIQ KEGI PDQQ LIF G+QLEDG
Sbjct: 545 LFLQRGGMQIFIKTLTGKTIILEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDG 604
Query: 250 RTLSDYNIQKESTLHLVLRLR 312
TL DY+I K+STL+LVLRLR
Sbjct: 605 VTLGDYDIHKKSTLYLVLRLR 625
Score = 108 bits (260), Expect = 4e-24
Identities = 53/76 (69%), Positives = 60/76 (78%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
MQIFVK GK ITLEV +SDTI++VKAKIQDK G PPDQQ L+F G QL+DGRTL DYN
Sbjct: 393 MQIFVKLFGGKIITLEVLSSDTIKSVKAKIQDKVGSPPDQQILLFRGGQLQDGRTLGDYN 452
Query: 271 IQKESTLHLVLRLRGG 318
I+ ESTLHL +R G
Sbjct: 453 IRNESTLHLFFHIRHG 468
Score = 107 bits (256), Expect = 1e-23
Identities = 55/76 (72%), Positives = 64/76 (84%), Gaps = 2/76 (2%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLSD 264
MQIFVKTLT K I LEVE+ DTIENVKA +QDKEGI P+ QRLIF GK+L+DG TL+D
Sbjct: 319 MQIFVKTLTRKRINLEVESWDTIENVKAMVQDKEGIQPQPNLQRLIFLGKELKDGCTLAD 378
Query: 265 YNIQKESTLHLVLRLR 312
Y+IQKESTLHLVL ++
Sbjct: 379 YSIQKESTLHLVLGMQ 394
Score = 101 bits (242), Expect = 6e-22
Identities = 54/82 (65%), Positives = 64/82 (78%), Gaps = 7/82 (8%)
Frame = +1
Query: 91 MQIFVKTLTGK-----TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL--EDG 249
MQIFV T +GK T+TL+VE+SDTIENVKAKIQD+EG+ PD QRLIF G++L ED
Sbjct: 155 MQIFVSTFSGKNFTSDTLTLKVESSDTIENVKAKIQDREGLRPDHQRLIFHGEELFTEDN 214
Query: 250 RTLSDYNIQKESTLHLVLRLRG 315
RTL+DY I+ STL L LRLRG
Sbjct: 215 RTLADYGIRNRSTLCLALRLRG 236
Score = 99 bits (238), Expect = 2e-21
Identities = 54/81 (66%), Positives = 60/81 (74%), Gaps = 5/81 (6%)
Frame = +1
Query: 91 MQIFVKTL-----TGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 255
M IFVK L TG+ LEVE+SDTI+NVKAK+QDKE IP D RLIFAGK LE GRT
Sbjct: 238 MYIFVKNLPYNSFTGENFILEVESSDTIDNVKAKLQDKERIPMDLHRLIFAGKPLEGGRT 297
Query: 256 LSDYNIQKESTLHLVLRLRGG 318
L+ YNIQK STL+LV R R G
Sbjct: 298 LAHYNIQKGSTLYLVTRFRCG 318
Score = 99 bits (238), Expect = 2e-21
Identities = 55/89 (61%), Positives = 62/89 (69%), Gaps = 7/89 (7%)
Frame = +1
Query: 73 FHRSNTMQIFVKTL-------TGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 231
FH + MQIFVKT T KTITLEVE+SDTI+NVK KIQ K GIP D+QRLIF G
Sbjct: 463 FHIRHGMQIFVKTFSFSGETPTCKTITLEVESSDTIDNVKVKIQHKVGIPLDRQRLIFGG 522
Query: 232 KQLEDGRTLSDYNIQKESTLHLVLRLRGG 318
+ L RTL DYNIQK ST+H + RGG
Sbjct: 523 RVLVGSRTLLDYNIQKGSTIHQLFLQRGG 551
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 117 bits (282), Expect = 9e-27
Identities = 56/77 (72%), Positives = 63/77 (81%)
Frame = +1
Query: 79 RSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 258
R M IF+KTLTG+ I LEVE DTIEN+KAKIQDK+GIP DQQRLIF GKQLEDG TL
Sbjct: 82 RHEVMFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTL 141
Query: 259 SDYNIQKESTLHLVLRL 309
+DYNIQ +S LHL+ RL
Sbjct: 142 ADYNIQNDSILHLIKRL 158
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 95.5 bits (227), Expect = 4e-20
Identities = 43/76 (56%), Positives = 57/76 (75%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
M+I VKTLT K I +E+E +DTIE +K +I++KEGIPP QR+++ GKQL D T YN
Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYN 60
Query: 271 IQKESTLHLVLRLRGG 318
+++ S LHLVL LRGG
Sbjct: 61 LERGSVLHLVLALRGG 76
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 69.3 bits (162), Expect = 3e-12
Identities = 30/74 (40%), Positives = 50/74 (67%)
Frame = +1
Query: 85 NTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 264
+T+++ +KTL +T T +V ++T+ K KI + G+P QQRLIF G+ L+D LS+
Sbjct: 22 STLELNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSE 81
Query: 265 YNIQKESTLHLVLR 306
Y+++ TLHL++R
Sbjct: 82 YHLENGHTLHLIVR 95
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 69.3 bits (162), Expect = 3e-12
Identities = 41/86 (47%), Positives = 51/86 (59%), Gaps = 13/86 (15%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK------------ 234
M IF+KTLTG+T T EV+ SDTI +KAK ++KEGIP +QQRLIF G+
Sbjct: 50 MMIFIKTLTGRTNTYEVKGSDTIRELKAKHEEKEGIPVEQQRLIFQGRISIKTVKGKSIN 109
Query: 235 -QLEDGRTLSDYNIQKESTLHLVLRL 309
++ D D I E T LVLRL
Sbjct: 110 LEVADSSDTIDLKINGEPTRQLVLRL 135
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/67 (47%), Positives = 46/67 (68%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
M+IFV T+ KT LEV+ SDTI+ +K+ I D+ G P DQQ L G +L++ T+SDYN
Sbjct: 141 MRIFVSTIKEKTFILEVKGSDTIKKLKSMIHDQGGPPVDQQDLNHLGTKLKNNATISDYN 200
Query: 271 IQKESTL 291
I+ ++ L
Sbjct: 201 IKPDANL 207
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVE-ASDTIE 162
M I +KTL GK I LEVE +S+TI+
Sbjct: 1 MHISIKTLEGKRIKLEVEDSSNTID 25
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/78 (39%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +1
Query: 82 SNTMQIFVKTLTG-KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 258
S +QIFV+ ++G KTI + E DT+E + +I+ K IP +QR+I+ GKQL+ +L
Sbjct: 92 STRLQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSL 151
Query: 259 SDYNIQKESTLHLVLRLR 312
+ Y+I+++++L LV R++
Sbjct: 152 TYYSIEQDASLQLVARMQ 169
>At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 58.0 bits (134), Expect = 8e-09
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = +1
Query: 85 NTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLS 261
+T+ I++ TL G I + V SD+IE+VK +IQ G Q+L+F G++L +
Sbjct: 33 DTIMIYL-TLPGSVIPMRVLESDSIESVKLRIQSYRGFVVRNQKLVFGGRELARSNSNMR 91
Query: 262 DYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICR 381
DY + + + LHLVL+L L++L +K C K CR
Sbjct: 92 DYGVSEGNILHLVLKL------SDLQVLDVKTTCGKH-CR 124
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +1
Query: 67 HVFHRSNTMQIF-VKTLTGKTITLEVEASDTIENVKAKIQDKEG--IPPDQQRLIFAGKQ 237
H+ + + +Q+ VKT GK VE I VK +I K G + PD+Q +++ G++
Sbjct: 102 HLVLKLSDLQVLDVKTTCGKHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEK 161
Query: 238 LEDGRTLSDYNIQKESTLHLVLR 306
LED ++D +S LHL++R
Sbjct: 162 LEDQSLINDICRNDDSVLHLLVR 184
>At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 58.0 bits (134), Expect = 8e-09
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = +1
Query: 85 NTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLS 261
+T+ I++ TL G I + V SD+IE+VK +IQ G Q+L+F G++L +
Sbjct: 33 DTIMIYL-TLPGSVIPMRVLESDSIESVKLRIQSYRGFVVRNQKLVFGGRELARSNSNMR 91
Query: 262 DYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICR 381
DY + + + LHLVL+L L++L +K C K CR
Sbjct: 92 DYGVSEGNILHLVLKL------SDLQVLDVKTTCGKH-CR 124
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +1
Query: 67 HVFHRSNTMQIF-VKTLTGKTITLEVEASDTIENVKAKIQDKEG--IPPDQQRLIFAGKQ 237
H+ + + +Q+ VKT GK VE I VK +I K G + PD+Q +++ G++
Sbjct: 102 HLVLKLSDLQVLDVKTTCGKHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEK 161
Query: 238 LEDGRTLSDYNIQKESTLHLVLR 306
LED ++D +S LHL++R
Sbjct: 162 LEDQSLINDICRNDDSVLHLLVR 184
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 54.4 bits (125), Expect = 9e-08
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +1
Query: 82 SNTMQIFVKTLTGKTITLEVEASDTI-ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 258
S +Q FV+ L GK++TL + E +K +I ++ IP QRLI G Q+ DG +
Sbjct: 6 SKPLQFFVRLLDGKSLTLSFSSPLAYGEQIKQRIFEQTKIPTHLQRLISGGYQISDGSAI 65
Query: 259 SDYNIQKESTLHLVLRLRGG 318
S Q ++T++LVL LRGG
Sbjct: 66 S----QPDATVNLVLSLRGG 81
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 264
M+IFVKTL+G +EV+ +D + +VK I+ +G P +Q LI GK L+D TL +
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE 60
Query: 265 YNIQKESTLHLVL 303
N+ + S + ++L
Sbjct: 61 NNVVENSFIVIML 73
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 51.2 bits (117), Expect = 9e-07
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +1
Query: 103 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 282
++ G +++ T+E+ K + +P +QQRLI+ G+ L+D +TL Y +Q +
Sbjct: 22 IRCSNGTKFSVKTSLDSTVESFKELVAQSSDVPANQQRLIYKGRILKDDQTLLSYGLQAD 81
Query: 283 STLHLV 300
T+H+V
Sbjct: 82 HTIHMV 87
>At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquitin
SP:P42740 from [Aglaothamnion neglectum]
Length = 79
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK---QLEDGRTLS 261
MQ+F+ GK +EVE + TI ++K KI D G+ Q L GK ++ G T+
Sbjct: 1 MQVFIIDEDGKKYCVEVEKTTTIADMKTKIYDATGMENAYQYLEHRGKIVLEVHGGTTMD 60
Query: 262 DYNIQKESTLHLVLRLRGG 318
DY I+ H+ R+RGG
Sbjct: 61 DYKIKACDIFHMSDRMRGG 79
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
M +++ T TG + ++ ++ +T+ +K KI+ +GIP +Q L GK LED DY
Sbjct: 1 MNVYIDTETGSSFSITIDFGETVLEIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60
Query: 271 IQKESTLHL 297
I ES L L
Sbjct: 61 ILFESRLLL 69
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +1
Query: 103 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 282
V+ G ++ T+E+ K I +P +QQRLI+ G+ L+D +TL Y +Q +
Sbjct: 22 VRCSNGTKFSVTTSLDSTVESFKELIAQNSDVPANQQRLIYKGRILKDDQTLLSYGLQAD 81
Query: 283 STLHLV 300
T+H+V
Sbjct: 82 HTVHMV 87
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/71 (30%), Positives = 45/71 (63%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
M+I V T + ITL+V++ +T+ENVKA ++ + +P QQ+L++ G ++ + LS
Sbjct: 1 MRITVMTAGEQIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALG 60
Query: 271 IQKESTLHLVL 303
++ + L +++
Sbjct: 61 VKDDDLLMMMV 71
>At1g64470.1 68414.m07309 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 213
Score = 49.2 bits (112), Expect = 4e-06
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +1
Query: 76 HRSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 252
H S + +++G T+ + + SD+I VK +IQ G +Q+L+F+G++L +
Sbjct: 29 HYSVKSVLVFLSVSGSTMPMLILESDSIAEVKLRIQTCNGFRVRRQKLVFSGRELARNAS 88
Query: 253 TLSDYNIQKESTLHLVLRL 309
+ DY + S LHLVL+L
Sbjct: 89 RVKDYGVTGGSVLHLVLKL 107
Score = 35.1 bits (77), Expect = 0.062
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 97 IFVKTLTGKTITLEVEASDTIENVKAKI-QDKEGIPP-DQQRLIFAGKQLEDGRTLSDYN 270
+ V T GK V+ + +K +I ++ +G P D Q ++F G++L+D R +
Sbjct: 113 VTVITTCGKVFQFHVDRRRNVGYLKKRISKEGKGFPEVDDQEILFKGEKLDDNRIIDGIC 172
Query: 271 IQKESTLHLVLR 306
S +HL+++
Sbjct: 173 KDGNSVIHLLVK 184
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +1
Query: 82 SNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTL 258
++ ++I +K L T TL VE + + ++K I G+ P++Q RL+F G+ L++ + L
Sbjct: 8 TDLIRIKIKILHSTTHTLSVERTIPVRDLKQDICYYCGVSPERQPRLLFRGRVLKNDQRL 67
Query: 259 SDYNIQKESTLHLV 300
SDY++++ TL+LV
Sbjct: 68 SDYHVEEGHTLYLV 81
>At3g06455.1 68416.m00747 splicing factor-related contains weak
similarity to Swiss-Prot:Q12874 splicing factor 3A
subunit 3 (Spliceosome associated protein 61, SAP 61,
SF3a60) [Homo sapiens]
Length = 366
Score = 48.8 bits (111), Expect = 5e-06
Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTI-ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 267
+Q FV+ L GK++TL + E +K +I ++ IP QRLI G Q+ +S
Sbjct: 9 LQFFVRLLDGKSVTLTFSSPIACGEQIKQRIFEQTKIPTHLQRLISGGFQIPGASAIS-- 66
Query: 268 NIQKESTLHLVLRLRGGT--IEPSLRILAMKYNCEK 369
Q ++T++LVL LRGG + LR + MK +K
Sbjct: 67 --QSDTTMNLVLSLRGGKGGLGSLLRNVVMKAGQKK 100
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
M + + T TG + ++ ++ +T+ +K KI+ +GIP +Q L GK LED DY
Sbjct: 1 MNVDIDTETGSSFSITIDFGETVLQIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60
Query: 271 IQKESTL 291
I ES L
Sbjct: 61 ILFESLL 67
>At4g03370.1 68417.m00459 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 295
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/69 (31%), Positives = 40/69 (57%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
M++ V+ +G T ++++ DT+ K KI+ + IP +Q + F GK LED + +++
Sbjct: 1 MKMTVENESGSTFSIDIGLQDTVLTFKRKIEMTQRIPVSRQTIFFQGKLLEDHLDIFEWD 60
Query: 271 IQKESTLHL 297
I + LHL
Sbjct: 61 ILQNPLLHL 69
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 261
M+IFVKTL G +EV+ D++ +VK I+ +G P +Q LI GK L+D T+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 262 DYNIQKESTLHLVL 303
+ + + S + +++
Sbjct: 61 ENKVAENSFIVIMM 74
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 261
M+IFVKTL G +EV+ D++ +VK I+ +G P +Q LI GK L+D T+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 262 DYNIQKESTLHLVL 303
+ + + S + +++
Sbjct: 61 ENKVAENSFIVIMM 74
>At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain, Pfam profile
PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 574
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +1
Query: 73 FHRSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DG 249
F+ + + +F+ T+ G I V SD+I +VK +IQ +G +Q+L++ G+++ +
Sbjct: 27 FNLDDPILVFL-TIAGSVIPKRVMESDSIASVKLRIQSIKGFFVKKQKLLYDGREVSRND 85
Query: 250 RTLSDYNIQKESTLHLVLRL 309
+ DY + LHLV+RL
Sbjct: 86 SQIRDYGLADGKLLHLVIRL 105
Score = 44.8 bits (101), Expect = 8e-05
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +1
Query: 70 VFHRSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE---GIPPDQQRLIFAGKQL 240
V S+ I V+T+ GK L VE S + VK +I KE GIP D + L G++L
Sbjct: 102 VIRLSDLQAISVRTVDGKEFELVVERSRNVGYVKQQIASKEKELGIPRDHE-LTLDGEEL 160
Query: 241 EDGRTLSDYNIQKESTLHLVL 303
+D R ++D ++ +HL++
Sbjct: 161 DDQRLITDLCQNGDNVIHLLI 181
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Frame = +1
Query: 61 SKHVFHRS-----NTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ-RLI 222
S VFH + TM+I + L GK L V +++ ++KAK K + ++
Sbjct: 485 SLRVFHSAPAIKLQTMKIKLSNLGGKGSLLTVGREESVSSLKAKASRKLDFKETEAVKMF 544
Query: 223 FAGKQLEDGRTLSDYNIQKESTLHLV 300
+ GK+LED ++L++ N+Q S +HL+
Sbjct: 545 YMGKELEDEKSLAEQNVQPNSLVHLL 570
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 261
M++ VKTL G + V SDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 262 DYNIQKESTLHLVL 303
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 261
M++ VKTL G + V SDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 262 DYNIQKESTLHLVL 303
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 261
M++ VKTL G + V SDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 262 DYNIQKESTLHLVL 303
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +1
Query: 88 TMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSD 264
+M+I VK+L GK L V +++ +++AK K + ++ + GK+L+D ++L+
Sbjct: 660 SMKIIVKSLGGKGSKLHVGIEESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSLAA 719
Query: 265 YNIQKESTLHLV 300
N+Q S +HL+
Sbjct: 720 QNVQPNSLVHLI 731
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 261
M++ VKTL G + V +DTI VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 262 DYNIQKESTLHLVL 303
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At4g05230.1 68417.m00789 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 206
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
M +F +T +G T +E+ DT+ +K KI+ + IP +Q L+F G L+D +
Sbjct: 1 MDVFFETRSGSTFEIELGYWDTVLEIKQKIEKYQRIPVSKQTLLFQGNVLQDHLDIEQCV 60
Query: 271 IQKESTLHL 297
I S + L
Sbjct: 61 ILNHSRIQL 69
>At4g03360.1 68417.m00458 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 284
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
+++ ++ +G + T++V DT+ +K KI+ +G P +Q LIF K L+D +
Sbjct: 2 IKVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQ 61
Query: 271 IQKESTLHL 297
I+ S + L
Sbjct: 62 IRHNSRILL 70
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/72 (31%), Positives = 42/72 (58%)
Frame = +1
Query: 85 NTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 264
+T+++ VK GK+I L V T++++K+++Q + P Q+LIF GK L + TL
Sbjct: 534 STIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQ 592
Query: 265 YNIQKESTLHLV 300
++ + L L+
Sbjct: 593 SDVGSGAKLMLM 604
>At4g02950.1 68417.m00402 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270
+ + ++ +G + T++V DT+ +K KI+ +G P +Q LIF K L+D +
Sbjct: 36 ISVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQ 95
Query: 271 IQKESTLHL 297
I+ S + L
Sbjct: 96 IRHNSRILL 104
>At1g53980.1 68414.m06149 polyubiquitin-related contains similarity
to polyubiquitin GI:166336 from (Aglaothamnion
neglectum)
Length = 91
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPP 204
M IFV TL GKT LEV+ S+ I+ VK I D+ +PP
Sbjct: 49 MSIFVSTLKGKTFNLEVKGSEIIQQVKNMIHDQ--VPP 84
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVE-ASDTIE 162
M+I +KT GKTI LE+E +S+TI+
Sbjct: 1 MKILIKTEKGKTINLELEDSSETID 25
>At4g05250.1 68417.m00793 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 246
M +F +T +G +E+ DT+ +K KI+ + IP +Q LIF G L+D
Sbjct: 1 MDVFFETQSGDKFEIELGYWDTMLEIKEKIEKYQCIPVSKQTLIFQGVVLQD 52
>At4g05310.1 68417.m00809 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 415
Score = 37.1 bits (82), Expect = 0.015
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 231
M+ V+ L G + +EVE +DT+ VK KI+ + +P +Q LI G
Sbjct: 1 MKFVVEILGGSSFEIEVERTDTLLVVKQKIEKSQRVPVSKQTLIVDG 47
>At4g05270.1 68417.m00797 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 129
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +1
Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 231
M+ V+ L G + LEV+ DT+ VK KI+ + IP +Q LI G
Sbjct: 1 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDG 47
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 37.1 bits (82), Expect = 0.015
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +1
Query: 118 GKTITLEVEA-SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 294
G+ + + V++ S+ + ++K KI + IP ++Q+L L+D +L+ YN+ L
Sbjct: 715 GQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILT 774
Query: 295 LVLRLRGG 318
L LR RGG
Sbjct: 775 LSLRERGG 782
>At5g14360.1 68418.m01678 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 163
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 133 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 246
L +EA+ T +K + G+ P QQRL+F GK+ ED
Sbjct: 83 LSIEATSTFGELKMVLSLLTGLEPKQQRLVFKGKERED 120
>At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase
family protein similar to phosphatidylinositol 4-kinase
type-II beta [Homo sapiens] GI:20159767; contains Pfam
profile PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 630
Score = 35.1 bits (77), Expect = 0.062
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 94 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 255
++FV+T TG + LE++ SD VK K+Q P ++ L F L++ T
Sbjct: 42 RVFVQTETGCVLGLELDRSDNAHTVKRKLQVALNFPIEESSLTFGDLVLKNDLT 95
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 103 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 246
V T++ + + ++A+ T +K I GI +QRL+F GK+ ED
Sbjct: 83 VSTVSQLSYEISIDANSTFGELKMMIAIVSGIEAKEQRLLFRGKERED 130
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +1
Query: 133 LEVEASD-TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG----RTLSDYNIQKESTL 291
LEVE + T+ ++ ++ + G+ P+ +LIFAGK L+D TLS I++ S +
Sbjct: 14 LEVELENWTLNMLRDEVAKRSGLDPESIKLIFAGKILKDDGDATLTLSQLGIKENSKI 71
>At4g14940.1 68417.m02294 copper amine oxidase, putative highly
similar to copper amine oxidase [Arabidopsis thaliana]
gi|2654118|gb|AAB87690
Length = 650
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 58 LSKHVFHRSNTMQIFVKTLTGKTITLEVEASDTI---ENVKAKIQDKEG 195
L F+R ++ +F + + G T+T++V++ I + + I DKEG
Sbjct: 172 LKASCFYRDGSVNVFTRPIEGITVTIDVDSMQVIKYSDRFRKPIPDKEG 220
>At1g22050.1 68414.m02758 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 119
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Frame = +1
Query: 148 SDTIENVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KEST 288
S T+ ++K K+ +DKE P + +LI AGK LE+ RTL++ + T
Sbjct: 28 SMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAESRLPVCELPGMIIT 87
Query: 289 LHLVLRL 309
+H+VLRL
Sbjct: 88 MHIVLRL 94
>At1g47680.1 68414.m05297 hypothetical protein
Length = 104
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 142 EASDTIENVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 297
E D +E++ K ++ G + +L +G+Q+ R L DY +Q E+T L
Sbjct: 31 EEDDGMEDITKKYHNEVGEVVQGVPQLRRSGRQISQSRYLEDYVMQSETTYGL 83
>At4g38340.1 68417.m05420 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 767
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = +1
Query: 118 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 297
GK ++ ++ ++EN K K + ++ I D R FAG + + + +TL
Sbjct: 473 GKQVSFSFSSASSLENRKRKTKAEKDITLDTLRQHFAGSLKDAAKNIG----VCPTTLKR 528
Query: 298 VLRLRGGTIEPSLRILAMKYNCEKM 372
+ R G + PS +I + ++ K+
Sbjct: 529 ICRQNGISRWPSRKIKKVGHSLRKL 553
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,965
Number of Sequences: 28952
Number of extensions: 306536
Number of successful extensions: 941
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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