Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D07
         (895 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.2  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   5.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   5.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 588 IWIRSVVTAIPNRPGV-QXXXXXXXXXXWFRSPQYKLNI 475
           IW+RS  TA+ + PG+ Q           FR+  Y+  +
Sbjct: 56  IWVRSDGTAVGDVPGLRQVLANGNLVFPPFRAEDYRQEV 94


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 253 YFYMELKVWVEGIQRIVCG 309
           Y +M +  W+    R+VCG
Sbjct: 133 YPWMSITDWMSPFDRVVCG 151


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 253 YFYMELKVWVEGIQRIVCG 309
           Y +M +  W+    R+VCG
Sbjct: 192 YPWMSITDWMSPFDRVVCG 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,898
Number of Sequences: 336
Number of extensions: 3563
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)