Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_D06
(890 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 31 0.78
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 2.4
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 29 3.1
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb... 29 4.1
At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to... 29 4.1
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 5.5
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 5.5
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ... 29 5.5
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ... 29 5.5
At3g20830.1 68416.m02634 protein kinase family protein contains ... 28 7.2
At2g47910.2 68415.m05988 expressed protein 28 7.2
At2g47910.1 68415.m05987 expressed protein 28 7.2
At5g20380.1 68418.m02424 transporter-related low similarity to v... 28 9.6
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 31.5 bits (68), Expect = 0.78
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -2
Query: 460 SCVIPLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAE 287
S IP+ L IT++PP + + A++P + N+L P+ R I AE
Sbjct: 260 SRTIPVKLKITIIPPKARRTIPSEADKP-------THTDELNFMNKLPPKRRRTIPSEAE 312
Query: 286 KTSHTSTLNLKHKM 245
K +HT LN +K+
Sbjct: 313 KPTHTDELNFMNKL 326
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 736 PTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 620
P A R RH+ R +GG+ S R R R + GA RG+
Sbjct: 571 PARGAPRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 638 LVRSPVPTLPLTGYLSAFLPSGSVAL 715
L+R +LP T Y +FLPS +VAL
Sbjct: 15 LLRISTASLPATNYFDSFLPSDAVAL 40
>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
(RbohA) / NADPH oxidase identical to respiratory burst
oxidase protein A from Arabidopsis thaliana [gi:3242781]
Length = 902
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 539 RPPDEHHKNRRSSQRW 586
RPPDEH NR S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682
>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 356
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -2
Query: 526 KRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAA 389
+R++R FT +LLA S +L VIP IL IT L S AA
Sbjct: 54 QRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGLALTSATFTSAA 99
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 347 PLPRSLTRCARSFGCGERYQLTQRR 421
P PRS RCA S GC R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 347 PLPRSLTRCARSFGCGERYQLTQRR 421
P PRS RCA S GC R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221
>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 493 GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 395
GL L F S +LS IPL++ ITV +E++ L
Sbjct: 924 GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956
>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 493 GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 395
GL L F S +LS IPL++ ITV +E++ L
Sbjct: 924 GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956
>At3g20830.1 68416.m02634 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 408
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 338 PIRKPPLPARWPIH*CRKNLPHL 270
P PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406
>At2g47910.2 68415.m05988 expressed protein
Length = 198
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 789 PPVQPTAAPYRVTIVLSXPGIXDLSPWQQPL 881
PP+ PT Y V I G DLSP+Q+ +
Sbjct: 24 PPMPPTTGRYEVVIDNDSIGRLDLSPFQRAI 54
>At2g47910.1 68415.m05987 expressed protein
Length = 246
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 789 PPVQPTAAPYRVTIVLSXPGIXDLSPWQQPL 881
PP+ PT Y V I G DLSP+Q+ +
Sbjct: 72 PPMPPTTGRYEVVIDNDSIGRLDLSPFQRAI 102
>At5g20380.1 68418.m02424 transporter-related low similarity to
vesicular glutamate transporter 3 [Rattus norvegicus]
GI:21685382
Length = 517
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 511 GLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAAAER 380
G +T L + S LS + W+++LPPL+ ++ + A +
Sbjct: 332 GHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,062,782
Number of Sequences: 28952
Number of extensions: 405552
Number of successful extensions: 1096
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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