Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_D05
(964 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.009
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.10
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 0.13
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.18
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.42
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.98
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 3.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 6.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 6.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.009
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Frame = +3
Query: 651 PPXVXGXPXPKPXXXPPPP-----XXAPPPXXXXXXXXFXPPPPPPP 776
PP P P P P PP PPP PPPPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 35.5 bits (78), Expect = 0.011
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Frame = +3
Query: 651 PPXVXGXPXPKPXXXPPPPXXA----PPPXXXXXXXXFXPPPPPPP 776
P + P P P PPP PPP PPPPPPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 35.1 bits (77), Expect = 0.015
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +3
Query: 672 PXPKPXXXPPPPXXAPPPXXXXXXXXFXPPPPPPP 776
P P P P P AP P PPPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 31.5 bits (68), Expect = 0.18
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 673 PXQNPXXPXPPPXXPPPLXGXXXFXXFXPPPPPP 774
P P PPP PPP G PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP--GVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Frame = +3
Query: 654 PXVXGXPXPKPXXX-----PPPPXXAPPPXXXXXXXXFXPPPPPPP 776
P + G P P P PPPP PP + P P P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.10
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 654 PXVXGXPXPKPXXXPPPPXXAPPPXXXXXXXXFXPPPPPPP 776
P P PPPP PPP P PPPP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 29.5 bits (63), Expect = 0.74
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +3
Query: 651 PPXVXGXPXPKPXXXPPPPXXAPPPXXXXXXXXFXPPPPPP 773
PP + P P PPP APP PPPP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP---MPAGPPSAPPPPLP 1736
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect(2) = 0.13
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 750 FXPPPPPPP 776
F PPPPPPP
Sbjct: 944 FPPPPPPPP 952
Score = 24.6 bits (51), Expect(2) = 0.13
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 756 PPPPPPPXXL 785
PPPPPPP L
Sbjct: 945 PPPPPPPPPL 954
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.18
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 699 PPPXXAPPPXXXXXXXXFXPPPPPPP 776
PP PPP PPPPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 672 PXPKPXXXPPPPXXAPPPXXXXXXXXFXPPPPPP 773
P P PPPP PP PPPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQP--------PPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.42
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -1
Query: 772 GGGGGGXXNXXXXXXXGGGAXXGGGGXXXGFGXGXPXTXGG 650
GG GGG GG G GG GFG G GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = -1
Query: 781 FXGGGGGGGXXNXXXXXXXGGGAXXGGGGXXXGFGXGXPXTXGG 650
F G GG GG + GG G G GFG G GG
Sbjct: 207 FGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 773 GGGGGGXKXXXXXXPXRGGGXXGGGXGXXGFWXGGP 666
GG GGG GGG G G G GF GGP
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF-GGGP 258
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Frame = -1
Query: 772 GGGGGGXXNXXXXXXXGGGAXXGG----GGXXXGFGXGXPXTXGG 650
GGG GG G G GG GG GFG G P GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG-GGPGGHGG 270
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.98
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Frame = +3
Query: 696 PPPPXX---APPPXXXXXXXXFXPPPPPPP 776
PPPP PP PPPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +3
Query: 651 PPXVXGXPXPKPXXXPPPPXXAPPPXXXXXXXXFXPPPPP 770
PP P P P P PPP P PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = +1
Query: 670 PPXQNPXXPXP-PPXXPPPLXGXXXFXXFXPPPP 768
PP + P P PP PPP G PP P
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 672 PXPKPXXXPPPPXXAPPPXXXXXXXXFXPPPPP 770
P KP P PP AP P PPPPP
Sbjct: 721 PAIKPQVTPAPPTPAPTP-----AVKHHPPPPP 748
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 702 PPXXAPPPXXXXXXXXFXPPPPPPP 776
PP A P PPPPPPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPP 197
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Frame = +3
Query: 654 PXVXGXPXPKPXXXPPP--PXXAPPPXXXXXXXXFXPPPPPPP 776
P P P P PP P PP PPP P P
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 651 PPXVXGXPXPKPXXXPPPPXXAPPPXXXXXXXXFXPPPPPPP 776
PP P P PP P PPP P P P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -3
Query: 776 WGGGGGGXKXXXXXXPXRGGGXXGGGXGXXGFWXGGPPHXRG 651
+GGG GG + G G GG G G GG +G
Sbjct: 28 FGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 725 RGGGXXGGGXGXXGFWXGGPP 663
RGGG GG G F GPP
Sbjct: 7 RGGGFRGGRGGSRPFTPSGPP 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,658
Number of Sequences: 5004
Number of extensions: 19728
Number of successful extensions: 366
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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