Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D04
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29090.1 68414.m03561 peptidase C1A papain family protein con...    33   0.19 
At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP pr...    31   1.0  
At2g34080.1 68415.m04172 cysteine proteinase, putative contains ...    31   1.4  
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro...    30   1.8  
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    29   4.1  
At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XC...    29   5.5  
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi...    29   5.5  
At4g23520.1 68417.m03390 cysteine proteinase, putative contains ...    28   7.2  
At4g10790.1 68417.m01759 UBX domain-containing protein low simil...    28   7.2  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.2  

>At1g29090.1 68414.m03561 peptidase C1A papain family protein
           contains similarity to cysteine protease SPCP1
           GI:13491750 from [Ipomoea batatas]; contains Pfam
           profile PF00112: Papain family cysteine protease
          Length = 355

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 404 DDADRELHYQSFKKHLAEINXLXEKNPYT-TFGINKFADYTPE 279
           D+ ++++ +  FKK+L  I    +K   T   G+N+FAD+T E
Sbjct: 60  DELEKQMRFDVFKKNLKFIEKFNKKGDRTYKLGVNEFADWTRE 102


>At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP
           protein (AALP) identical to AALP protein GI:7230640 from
           [Arabidopsis thaliana]; similar to barley aleurain
          Length = 358

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 407 QDDADRELHYQSFKKHLAEINXLXEKNPYTTFGINKFADYT-PEXQQSRLG 258
           Q+  + +L +  FK++L  I    +K      G+N+FAD T  E Q+++LG
Sbjct: 71  QNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLG 121


>At2g34080.1 68415.m04172 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 345

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 407 QDDADRELHYQSFKKHLAEINXLXEK-NPYTTFGINKFADYTPE 279
           +D+ ++ +    FKK+L  I    +K N     G+N+FAD+T E
Sbjct: 51  RDELEKNMRRDVFKKNLKFIENFNKKGNKSYKLGVNEFADWTNE 94


>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
           protease identical to SP|P43297 Cysteine proteinase
           RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
           thiol protease RD21A SP:P43297 from [Arabidopsis
           thaliana]
          Length = 462

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -1

Query: 395 DRELHYQSFKKHLAEINXLXEKNPYTTFGINKFADYTPEXQQSR-LGLRLPAK 240
           +++  ++ FK +L  ++   EKN     G+ +FAD T +  +S+ LG ++  K
Sbjct: 68  EKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEKK 120


>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 398 ADRELHYQSFKKHLAEINXLXEKNPYTTFGINKFADYTPEXQQSR-LGLRLPAKK 237
           A+++  ++ FK +L  I+    KN     G+ +FAD T E  +S  LG + P K+
Sbjct: 69  AEKDQRFEIFKDNLRFIDEHNTKNLSYKLGLTRFADLTNEEYRSMYLGAK-PTKR 122


>At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XCP2)
           identical to papain-type cysteine endopeptidase XCP2
           GI:6708183 from [Arabidopsis thaliana]
          Length = 356

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 395 DRELHYQSFKKHLAEINXLXEKNPYTTFGINKFADYT-PEXQQSRLGLR 252
           ++ L ++ FK +L  I+   +K      G+N+FAD +  E ++  LGL+
Sbjct: 67  EKFLRFEVFKDNLKHIDETNKKGKSYWLGLNEFADLSHEEFKKMYLGLK 115


>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
           protein ESTs gb|F20110 and gb|F20109 come from this
           gene; contains Pfam profile PF00515: TPR Domain
          Length = 1558

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 655 FTNKAFFSLHFSCGLS 608
           + N+A F LHF+CGLS
Sbjct: 904 YVNRALFLLHFTCGLS 919


>At4g23520.1 68417.m03390 cysteine proteinase, putative contains
           similarity to cysteine proteinase (thiol protease) RD21A
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 356

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 416 GNTQDDA--DRELHYQSFKKHLAEINXLXEKNPYTTFGINKFADYT 285
           G T  +A  ++E  +Q+FK +L  I+    KN     G+ +FAD T
Sbjct: 55  GKTYTNALGEKERRFQNFKDNLRFIDQHNAKNLSYQLGLTRFADLT 100


>At4g10790.1 68417.m01759 UBX domain-containing protein low
           similarity to SP|Q9UNN5 FAS-associated factor 1 (FAF1
           protein) {Homo sapiens}; contains Pfam profile PF00789:
           UBX domain
          Length = 480

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 176 HNTFISXGIXFRXTEVAKLMSS*QAASIPTCSAVPQEYNQQI 301
           +  F+S G   R +E  K+ +S +A+  P C+ V    NQ+I
Sbjct: 234 NENFVSWGGSIRSSEGFKMSNSLKASRFPFCAVVMPAANQRI 275


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 821 PNTXPPXPGXWPIHXCRKNLPHL 753
           P++ PP P   P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,023
Number of Sequences: 28952
Number of extensions: 209717
Number of successful extensions: 424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)