Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D03
         (940 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.012
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.012
SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.015
SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.047
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.083
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 34   0.14 
SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.44 
SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)                     32   0.58 
SB_57605| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.1  
SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 37.9 bits (84), Expect = 0.012
 Identities = 18/71 (25%), Positives = 37/71 (52%)
 Frame = +1

Query: 112 YDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFAD 291
           +D+    + F+ F ++H++ Y+DD++       F+ ++  I  +N ++       N FAD
Sbjct: 477 FDIPHLDDDFDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHFAD 536

Query: 292 YTPEEQQSRLG 324
            T +E +S  G
Sbjct: 537 LTDDEFKSYKG 547


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 37.9 bits (84), Expect = 0.012
 Identities = 17/73 (23%), Positives = 37/73 (50%)
 Frame = +1

Query: 112 YDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFAD 291
           +++ +   +F+ +VK+H + YKD+ +     + FK +L  I+  N ++      +N   D
Sbjct: 547 HNVEKVHRVFDKYVKKHKKNYKDNKEHHTRREHFKHNLRFIHSKNRRHAGYYLAMNHLGD 606

Query: 292 YTPEEQQSRLGLR 330
            + +E +   G R
Sbjct: 607 RSDKELRVLRGRR 619


>SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 37.5 bits (83), Expect = 0.015
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = +1

Query: 118 LNQAKEL----FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKF 285
           L Q++EL    F+ F ++H++ Y+DD++       F+ ++  I  +N ++       N F
Sbjct: 132 LGQSRELVDDDFDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHF 191

Query: 286 ADYTPEEQQSRLG 324
           AD T +E +S  G
Sbjct: 192 ADLTDDEFKSYKG 204


>SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 35.9 bits (79), Expect = 0.047
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = +1

Query: 139 FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQSR 318
           F+ F ++H++ Y+DD++       F+ ++  I  +N ++       N FAD T +E +S 
Sbjct: 44  FDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHFADLTDDEFKSY 103

Query: 319 LG 324
            G
Sbjct: 104 KG 105


>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 35.1 bits (77), Expect = 0.083
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +1

Query: 139  FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQS 315
            F+ F ++H++ Y+DD++       F+ ++  I  +N ++       N FAD T +E +S
Sbjct: 1194 FDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHFADLTDDEFKS 1252


>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = +1

Query: 139  FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQSR 318
            F+ F ++H++ Y+DD++       F+ ++  I  +N ++       N FAD T +E +S 
Sbjct: 1286 FDEFRQQHDKMYEDDSEHCRRKHIFRHNVRYIRSMNRRSLPHKLEPNHFADLTDDEFKSY 1345

Query: 319  LG 324
             G
Sbjct: 1346 KG 1347


>SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = +1

Query: 118 LNQAKEL----FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKF 285
           L Q+++L    F+ F ++H++  +DD++       F+ ++  I  +N ++       N F
Sbjct: 53  LGQSRDLVDDDFDEFRQQHDKVCEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHF 112

Query: 286 ADYTPEEQQSRLG 324
           AD T +E +S  G
Sbjct: 113 ADLTDDEFKSYKG 125


>SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)
          Length = 234

 Score = 32.3 bits (70), Expect = 0.58
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = +1

Query: 112 YDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFAD 291
           Y  +   + F+ F ++H++ Y+DD++       F+ ++  I  +  ++       N F D
Sbjct: 35  YSRDLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMKRRSLPYKLEPNHFGD 94

Query: 292 YTPEEQQSRLG 324
            T +E +S  G
Sbjct: 95  LTDDEFKSYKG 105


>SB_57605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   SLRXTIGNP*DLVSVALLIATVVMASSAETDTPRH 111
           S R TIG    ++ + ++I T   AS+A TDT +H
Sbjct: 280 STRKTIGVTVIIIVIIIIIVTTTTASTATTDTTQH 314


>SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 148 FVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQS 315
           F ++H++ Y+DD+        F+ ++  I  +N ++       N F D T +E +S
Sbjct: 44  FREQHDKVYEDDSKHHRLKHIFRHNVRYIRSMNRRSLPYKLEPNHFGDLTDDEFKS 99


>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 88  AETDTPRHYD---LNQAKELFEIFVK-EHNREYKDDADRELHYQSFKKHLAEINQLN 246
           AE D  R+ +     Q  E ++ FVK +H +  K  ADREL  +  +K +    + N
Sbjct: 250 AEEDKKRYVEELRAYQQSEQYQAFVKRQHVKRTKHPADRELEIRELRKSVLTSQEQN 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,933,065
Number of Sequences: 59808
Number of extensions: 296639
Number of successful extensions: 679
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2740956230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)