Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D03
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   9.2  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 48  CGVVNSHSSNGVLGG 92
           CGV N H   G+LGG
Sbjct: 329 CGVHNLHGMPGILGG 343


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 106 RHYDLNQAKELFEIFV-KEHNREYKDDADRELHYQSFKKHLAE 231
           RH D N  +   E    ++ +REYK D   +  +   +KHL E
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRE 280


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = +3

Query: 21  YRESLRFGQCGVVNSHSSNGVLGGDRYSETL*PQSSQRIVRNFRQRT*QGIQG*CRQRAA 200
           YR+     QC  VN H S+  L   R +    P  S       +  +  G+   C ++ +
Sbjct: 27  YRQPDGMNQCQAVNGHCSHLCLPAPRINSKS-PLLSCACPDGLKLLS-DGLM--CVEKVS 82

Query: 201 LSIIQETLGRDKPIEREE 254
            +I+  T   +KP +R E
Sbjct: 83  TTIVPTTQEINKPFKRLE 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,697
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)