Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_D02
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 40 6e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.073
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.22
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.39
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 3.6
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 27 3.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 8.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +3
Query: 567 GPPPXPXGXGFXGXGPPXPPPKXXPPGXPXGGA 665
GPPP P G G GPP PPP PP GG+
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP--PPPAVSAGGS 790
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/58 (27%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Frame = +3
Query: 558 PXXGPPPXPXGXGFXGXGPPXPPPKXXPPGXPXGGAXP---XXXXGXKXFXPXPPRXP 722
P P P P G PP PPP P P G + + P P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = +3
Query: 570 PPPXPXGXGFXGXGP-PXPPPKXXPPGXPXGGAXPXXXX-GXKXFXPXPPRXPP 725
PPP P P P P P PP GG P G P PP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP---PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.073
Identities = 22/66 (33%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Frame = +3
Query: 549 KXXPXXGPPPX-------PXGXGFXGXGPPXPPPKXXPPGXPXGGAXPXXXXGXKXFXPX 707
K P PPP P G G P PPP PP G+ P G P
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP---PPRSNAAGSIPLPPQGRSAPPPP 364
Query: 708 PPRXPP 725
PPR P
Sbjct: 365 PPRSAP 370
Score = 29.5 bits (63), Expect = 0.68
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Frame = +3
Query: 570 PPPXPXGXGFXGXGPPXPPPKXXPPGXPXG---GAXPXXXXGXKXFXPXPPRXP 722
P P G PP P P PP P A P G P PP P
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Frame = +3
Query: 573 PPXPXGXGFXGXGPPXPPPKXXPPGXPXGG-AXPXXXXGXKXFXPXP---PRXPP 725
PP P PP PP PP P G A P P P P PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPS-APPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.22
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 558 PXXGPPPXPXGXGFXGXGPPXPPPKXXPPG 647
P PPP P GF PP PP PPG
Sbjct: 5 PPGNPPPPPPPPGFE---PPSQPPPPPPPG 31
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.39
Identities = 22/58 (37%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Frame = -1
Query: 724 GGXLGGXGLXXFXPXFXXGXAPPFGXPGGXXL-----GGGXGGPXPXXPFPXGXGGGP 566
GG GG G P G FG GG GG GGP P G GGGP
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/50 (42%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 712 GGXGLXXFXPXFXXGXAPPFGX-PGGXXLGGGXGGPXPXXPFPXGXGGGP 566
GG G P G FG PGG GGG GG P G GGGP
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGG--FGGGLGG---FGGGPGGFGGGP 265
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/51 (41%), Positives = 21/51 (41%)
Frame = -1
Query: 724 GGXLGGXGLXXFXPXFXXGXAPPFGXPGGXXLGGGXGGPXPXXPFPXGXGG 572
GG GG G P G FG GG LGG GGP P G GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFG--GG--LGGFGGGPGGFGGGPGGHGG 270
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 207 KKXKKKKKXXKKKXFEKKXXKKK 275
KK KK+K KK+ EKK KKK
Sbjct: 450 KKEAKKEKKEKKEKKEKKEKKKK 472
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 205 KKKXRKKKXXXKKKXLKKKXXKKNXXXP 288
KKK +KKK KKK K+K K P
Sbjct: 436 KKKKKKKKNNKKKKKNKRKNIKPGPLGP 463
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Frame = +3
Query: 558 PXXGPPPXPXGXGFXGXGPPXPPPKXXPP-GXPXGGAXPXXXXGXKXFXPXPPRXPP 725
P G PP P PP PPP PP P G P P P P
Sbjct: 1174 PSSGIPPVPKPAAGV---PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.148 0.500
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,684
Number of Sequences: 5004
Number of extensions: 19787
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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