Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D01
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   4.1  
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    29   4.1  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.4  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.4  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.1  
At5g20380.1 68418.m02424 transporter-related low similarity to v...    28   9.4  

>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 531 RPPDEHHKNRRSSQRW 578
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 716 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 612
           A R RH+ R  +GG+ S  R  R R +  GA RG+
Sbjct: 575 APRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 339  PLPRSLTRCARSFGCGERYQLTQRR 413
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 339  PLPRSLTRCARSFGCGERYQLTQRR 413
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 330 PIRKPPLPARWPIH*CRKNLPHL 262
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At5g20380.1 68418.m02424 transporter-related low similarity to
           vesicular glutamate transporter 3 [Rattus norvegicus]
           GI:21685382
          Length = 517

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 503 GLFTVPGLLLAFCSHVLSCVIXLILWITVLPPLSELIPLAAAER 372
           G +T    L  + S  LS  +    W+++LPPL+ ++  + A +
Sbjct: 332 GHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,942,768
Number of Sequences: 28952
Number of extensions: 314262
Number of successful extensions: 816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)