Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C24
         (942 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3QX14 Cluster: Wiskott-Aldrich syndrome protein; n=1; ...    35   3.4  

>UniRef50_A3QX14 Cluster: Wiskott-Aldrich syndrome protein; n=1;
           Suberites domuncula|Rep: Wiskott-Aldrich syndrome
           protein - Suberites domuncula (Sponge)
          Length = 410

 Score = 34.7 bits (76), Expect = 3.4
 Identities = 26/92 (28%), Positives = 28/92 (30%)
 Frame = +2

Query: 617 GGGXXAPPPXXGPXKXTLXXXGAKPGQEL*KXRXFPLXETPPAPXXTXPXAXPENXGGXH 796
           G G   PPP  GP +      G  P     +    P    PP P        P   GG  
Sbjct: 280 GRGHPPPPPRGGPGR------GGPPPPSNSRGGSAPAPPPPP-PVGVPAPPPPPPVGGTG 332

Query: 797 PPXKKXXXGXPRESPXRXXPPXXANXXPXGXG 892
           PP      G P   P R  P       P G G
Sbjct: 333 PPKPPSAAGGPPPPPSRDKPSSSLPAPPAGGG 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,461,312
Number of Sequences: 1657284
Number of extensions: 4091280
Number of successful extensions: 18902
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17661
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86549281324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)