Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C24
         (942 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0270 - 2876907-2877547,2877838-2878012                           29   7.1  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   9.4  

>10_01_0270 - 2876907-2877547,2877838-2878012
          Length = 271

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 828 PAKAPXAXPPPXXRXPXPPAXGLPTXXY 911
           PA A    PPP    P PP    PT  Y
Sbjct: 176 PAPAAYHKPPPSYTHPAPPVYSYPTPAY 203


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 828 PAKAPXAXPPPXXRXPXPPAXGLP 899
           P KA    PPP    P PPA G P
Sbjct: 331 PPKAAPPPPPPKGPPPPPPAKGPP 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,169,435
Number of Sequences: 37544
Number of extensions: 152511
Number of successful extensions: 948
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)