BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fdpeP01_F_C24 (942 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_01_0270 - 2876907-2877547,2877838-2878012 29 7.1 02_05_0686 - 30900748-30902167,30903442-30904742 28 9.4 >10_01_0270 - 2876907-2877547,2877838-2878012 Length = 271 Score = 28.7 bits (61), Expect = 7.1 Identities = 12/28 (42%), Positives = 12/28 (42%) Frame = +3 Query: 828 PAKAPXAXPPPXXRXPXPPAXGLPTXXY 911 PA A PPP P PP PT Y Sbjct: 176 PAPAAYHKPPPSYTHPAPPVYSYPTPAY 203 >02_05_0686 - 30900748-30902167,30903442-30904742 Length = 906 Score = 28.3 bits (60), Expect = 9.4 Identities = 12/24 (50%), Positives = 12/24 (50%) Frame = +3 Query: 828 PAKAPXAXPPPXXRXPXPPAXGLP 899 P KA PPP P PPA G P Sbjct: 331 PPKAAPPPPPPKGPPPPPPAKGPP 354 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,169,435 Number of Sequences: 37544 Number of extensions: 152511 Number of successful extensions: 948 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 642 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 918 length of database: 14,793,348 effective HSP length: 82 effective length of database: 11,714,740 effective search space used: 2706104940 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -