Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C24
         (942 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     31   1.8  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              31   1.8  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               29   7.2  

>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 25/97 (25%), Positives = 29/97 (29%)
 Frame = +2

Query: 569 PXXRQXGXEPXKCPXAGGGXXAPPPXXGPXKXTLXXXGAKPGQEL*KXRXFPLXETPPAP 748
           P   + G  P   P    G   PPP  GP + +L        +        PL   PP  
Sbjct: 197 PPHSRHGSAPPP-PERSSGPPPPPPGRGPSQRSLAPPPTGSSR--------PLPAPPPGE 247

Query: 749 XXTXPXAXPENXGGXHPPXKKXXXGXPRESPXRXXPP 859
               P       GG  PP K       R S     PP
Sbjct: 248 NRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNPPPPP 284



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 28/104 (26%), Positives = 32/104 (30%), Gaps = 5/104 (4%)
 Frame = +2

Query: 608 PXAGGGXXAPPPXXGPXKXTLXXXG--AKPGQEL*KXRXFPLXETPPAPXXT---XPXAX 772
           P  G     PPP  GP   +    G    P ++       PL  TPP P  +    P   
Sbjct: 273 PKRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSRDQVPLPP 332

Query: 773 PENXGGXHPPXKKXXXGXPRESPXRXXPPXXANXXPXGXGATXP 904
           P   G   PP        P  S  R  PP      P   G   P
Sbjct: 333 PPLRGQIAPP--PPPISKPPTS-TRSAPPPPPGRAPQPLGGPPP 373


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 25/97 (25%), Positives = 29/97 (29%)
 Frame = +2

Query: 569 PXXRQXGXEPXKCPXAGGGXXAPPPXXGPXKXTLXXXGAKPGQEL*KXRXFPLXETPPAP 748
           P   + G  P   P    G   PPP  GP + +L        +        PL   PP  
Sbjct: 109 PPHSRHGSAPPP-PERSSGPPPPPPGRGPSQRSLAPPPTGSSR--------PLPAPPPGE 159

Query: 749 XXTXPXAXPENXGGXHPPXKKXXXGXPRESPXRXXPP 859
               P       GG  PP K       R S     PP
Sbjct: 160 NRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNPPPPP 196



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 28/104 (26%), Positives = 32/104 (30%), Gaps = 5/104 (4%)
 Frame = +2

Query: 608 PXAGGGXXAPPPXXGPXKXTLXXXG--AKPGQEL*KXRXFPLXETPPAPXXT---XPXAX 772
           P  G     PPP  GP   +    G    P ++       PL  TPP P  +    P   
Sbjct: 185 PKRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSRDQVPLPP 244

Query: 773 PENXGGXHPPXKKXXXGXPRESPXRXXPPXXANXXPXGXGATXP 904
           P   G   PP        P  S  R  PP      P   G   P
Sbjct: 245 PPLRGQIAPP--PPPISKPPTS-TRSAPPPPPGRAPQPLGGPPP 285


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 26/100 (26%), Positives = 26/100 (26%)
 Frame = +2

Query: 560  NXXPXXRQXGXEPXKCPXAGGGXXAPPPXXGPXKXTLXXXGAKPGQEL*KXRXFPLXETP 739
            N  P     G E       GG    PPP  G            PG         P    P
Sbjct: 897  NESPSQTPGGSESPSASPPGGSVPPPPPPPG---GNAPLPPPPPGGSAPSQPPPPGGNAP 953

Query: 740  PAPXXTXPXAXPENXGGXHPPXKKXXXGXPRESPXRXXPP 859
            P P      A P   GG  PP      G     P    PP
Sbjct: 954  PPPPPPGGSAPP--PGGGAPPLPPPPGGSAPPPPPPPPPP 991


>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = +2

Query: 722 PLXETPPAPXXTXPXAXPENXGGXHPPXKKXXXGXPRESPXRXXPP 859
           P  + PP P    P A P+   G  PP      G    SP +   P
Sbjct: 219 PTPKPPPTPKTPKPGAAPKIKNGCLPPCTTSVMGASYSSPAQFVMP 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,386,369
Number of Sequences: 59808
Number of extensions: 118554
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2752873431
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)